RNA id: XM_036955130.1


Basic Information

Item Value
RNA id XM_036955130.1
length 2089
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC118941495
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57099441 ~ 57102342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TatttttagtttagttttatACATTTACATCCCGCACTGAATGTAAACCAGGGCGGAAATCAGTTCCGGCGGCTTCGCGCATGCGCGATTCATTTTCAGTCTGGAcgcggaggggtgaacatctcctctGACTGCTGCGAGAGGACTGGGCCGCatgtgagtgctttgggacggtgtggggcccacggcagcacccgctgctcgttgagaagagtaagaacgatacgtgctttcacgtcagtctccaataacaccagaaaaagtcgcTAGATTTGTCGCTAGTCGCTTTTTTGAAAAAGTCtcgctagaggggtctgaatactcgctaaatatagcgacaaagtcgctaagttggcaacactgcccaCATTAGCTAAACATGAATATACTATAACCACATTTCATATGCGTGTATTACTAGCACAGATGTAAACATAATCAGATAAGAGAGATCGGTTCCCAATTTAGCCTTAACATTAAGGTCTAACGTTAACTTACACAGcgacaactgccttgttcaggggcagaacgacagatgtttaccttgtcagcccgggGATTTGATGTCGTTTACCGGCCCAACGCTGTAACCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCTTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGTCCAGAACCACATCACTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGACATGTAGTACCCGTCTGTTAGTTCTTCTCACTGGTGGATTTGGTGGTATCCTGTATAGCTTCCTGCATTTACTCCCAGCAAGCACAAAACCCTTCATAGAGTTGGTccatactgactgtctctgtcatttTGAGGGAAAACACCTGCTCCAGATCAGTGAAGGAGAGGTTTTGTTGCATGTTTATCCATATTTCGTTGATATGCCAAACCGAGAGAACAACAACAGAAATTACTTTGCAGGAATTGGCGTGTTTACTGTGATTTGATGAATATACGGGACAAGGGAGGTCCCGTATGGGACAAACCAATTTAGCCCAATATAAGAGCCATCCCGGCTAATACGGGACAGTTGGCAACCCTATTTGACGTTTTCAAATTAAACTCTCATTTAACGTgtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1878196 lncRNA upstream 88522 57010330 ~ 57010919 (+) True G1641904
TU1878175 lncRNA upstream 107308 56991885 ~ 56992133 (+) True G1641893
TU1878165 lncRNA upstream 113031 56986189 ~ 56986410 (+) True G1641883
TU1878161 lncRNA upstream 116147 56982843 ~ 56983294 (+) True G1641879
TU1878160 lncRNA upstream 117030 56982208 ~ 56982411 (+) True G1641878
TU1878255 lncRNA downstream 16368 57118710 ~ 57129272 (+) True LOC110498166
TU1878235 lncRNA downstream 58937 57161279 ~ 57162259 (+) True G1641933
TU1878232 lncRNA downstream 60408 57162750 ~ 57166872 (+) True LOC118941498
TU1878367 lncRNA downstream 93795 57196137 ~ 57196951 (+) True LOC110498389
TU1878458 lncRNA downstream 170110 57272452 ~ 57272747 (+) True G1642100
XR_005037779.1 mRNA upstream 2810 57089069 ~ 57096631 (+) False LOC110517953
XR_005037778.1 mRNA upstream 2810 57089070 ~ 57096631 (+) False LOC110517953
XR_005037780.1 mRNA upstream 2810 57089070 ~ 57096631 (+) False LOC110517953
XR_005037777.1 mRNA upstream 3167 57089080 ~ 57096274 (+) False LOC110517953
XM_036955132.1 mRNA upstream 3969 57092572 ~ 57095472 (+) True LOC110517953
XM_036955131.1 mRNA downstream 630 57102972 ~ 57105777 (+) True LOC118941496
XR_005037790.1 mRNA downstream 10923 57113265 ~ 57127858 (+) False LOC110498166
XR_005037791.1 mRNA downstream 10923 57113265 ~ 57127858 (+) False LOC110498166
XR_005037794.1 mRNA downstream 10927 57113269 ~ 57127858 (+) False LOC110498166
XR_005037789.1 mRNA downstream 10932 57113274 ~ 57127475 (+) False LOC110498166
TU1877964 other upstream 269132 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 588344 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 588344 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 593544 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 1169146 55927648 ~ 55930295 (+) True LOC110498153
TU1878241 other downstream 33484 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 172711 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 554007 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1062135 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1190994 58293336 ~ 58298235 (+) False LOC110498189