RNA id: TU1878232


Basic Information

Item Value
RNA id TU1878232
length 1663
lncRNA type read_through
GC content 0.44
exon number 3
gene id LOC118941498
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57069851 ~ 57167057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTCCATGGGTTGAGAGATGGTCTTTGTGCTGACGTGGTCGCTGCTGGTACATTGGATCCTTCCAGTCAATACGGAGATGGTCATGTTACCACCGGTTAGTGACGGAGACTGTTGTGACAGTGTACACTGACCGCtgtcacagacagacaacatccAGACATCTTTAACTGAACAGTTCACTGTGACATCACAGCAACCCACACTTGTGTTGAAGAGAGATGTGACATCCATGACTGGTTTGGGAACATGATCTATAAGAGACAGTTTTTAGAACCAAAGAAGAGACAGATAATTATTAGTCCTACATTCATTATTGAACCTCATCAGACACATTAAATGTACAGCAAATGACCAGAACTGAAGCCTTAGAAAACTCACCCTCCACTAACAGTCTATATGTAGTAGTTGATTGTTTCCAATGTTTCCTGTAGTTTACCATGTAAATTCCACTGTCAGTTTCCATTAGATTCTTAATACACAGAGAATGGTTATCATTGTTATAGTCCACCTTCTCCTTGTATTTAGGAGAGATCTCTTTGTCTCCAAATATTACATCACTGTCCTTCCTCCATTGAAGTCCTTTGATCATCTCAGGAGGTTCTGGAACAACCAGACATATTGAATCCCCCTTCAACCCATACTGGTCCACTGAAGGTTCTGCCCTGATTCCTAATGAGAGAGGACCAAGATCACATTTAGCATTTCACTGACTGTCATTAATGTACATATTAAATCAGTAAATCATTTGCTGCCTATAAAAAAACTTTTCCAATTACCCATTTTATGTGCACAAAGTTAACATTCTACAGTTTAATTCCAATGTCAAAAGAGATGTctccacacaatataatgaatAGGTTACCTATGGTGATGCATAGCCATAAAATGAGAAGAAACCCCAGAATATTCATATTCCTTTTGAAAATGAGAGATAAAGTTTCACAGCGCAGTCCCTGAATAATGCTGCTTAATATATATCACTGCGACTTCAAACCACCTCTTCAGAATCAGGCCTGAACTATACTTACTGTTGATTGGTTCTCGGCCAAAGTAGGTGGTTTCCGGAGAGGCAAGTAGCCTTGTGGGTTACAGCGTTGGGCCGGTAAACGACATCAAATCcccgggctgacaagCCCTCACCGGCACCCTGGGTGATCCAGGAGAAGACAAGGGAGCTTCAGTGGACCCTCCTGATGGGCGAGCAGGacatacaggaggaggaggagtggtatGGGGACGAGATACCTTGTAACTGGAGATTCTTTCAAAATGATTGCCTACAGTTCCCGTGTCGGGCTCTGCAGGGTTGGGTGACCAGGGCCAGGGCAACATCAGAcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccaggcactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccagacactacactatgcacaaccaaatGCTCTTCTAAGagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggctcttctaagagggtgctgttccctggcaacaccatacactacactatgcacaaccaaaggCTATTCTTAGagggtgctgttccctggcaacaccatagactacactatgcacaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1878235 lncRNA upstream 491 57161279 ~ 57162259 (+) True G1641933
TU1878255 lncRNA upstream 33478 57118710 ~ 57129272 (+) True LOC110498166
TU1878196 lncRNA upstream 151831 57010330 ~ 57010919 (+) True G1641904
TU1878175 lncRNA upstream 170617 56991885 ~ 56992133 (+) True G1641893
TU1878165 lncRNA upstream 176340 56986189 ~ 56986410 (+) True G1641883
TU1878367 lncRNA downstream 29265 57196137 ~ 57196951 (+) True LOC110498389
TU1878458 lncRNA downstream 105580 57272452 ~ 57272747 (+) True G1642100
TU1878409 lncRNA downstream 110455 57277327 ~ 57278371 (+) True G1642060
TU1878459 lncRNA downstream 112388 57279260 ~ 57279537 (+) True G1642101
TU1878434 lncRNA downstream 116252 57283124 ~ 57315063 (+) False G1642080
XM_036955133.1 mRNA upstream 18632 57141510 ~ 57144118 (+) False LOC118936466
XM_036955134.1 mRNA upstream 18632 57141515 ~ 57144118 (+) False LOC118936466
XM_036955135.1 mRNA upstream 18632 57141558 ~ 57144118 (+) True LOC118936466
XM_036955136.1 mRNA upstream 25855 57126702 ~ 57136895 (+) False LOC110498166
XR_005037797.1 mRNA upstream 34892 57113274 ~ 57127858 (+) False LOC110498166
XM_036955140.1 mRNA downstream 9967 57176839 ~ 57196955 (+) False LOC110498389
XM_036955142.1 mRNA downstream 48367 57215239 ~ 57274590 (+) False LOC110498167
XM_036955141.1 mRNA downstream 48367 57215239 ~ 57274602 (+) False LOC110498167
XM_036955143.1 mRNA downstream 48718 57215590 ~ 57274602 (+) True LOC110498167
XM_036955145.1 mRNA downstream 233885 57400757 ~ 57483898 (+) False LOC110498392
TU1878241 other upstream 18825 57135826 ~ 57143925 (+) True G1641935
TU1877964 other upstream 332441 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 651653 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 651653 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 656853 56500157 ~ 56505897 (+) True G1641405
TU1878413 other downstream 108181 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 489477 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 997605 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1126464 58293336 ~ 58298235 (+) False LOC110498189
TU1880791 other downstream 1887651 59054523 ~ 59057223 (+) True G1644123

Expression Profile