RNA id: TCONS_00048967


Basic Information

Item Value
RNA id TCONS_00048967
length 541
RNA type processed_transcript
GC content 0.52
exon number 3
gene id XLOC_024886
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36960724 ~ 37071036 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCGGCTCTCGGCTCCGGCACGGGTCGTGGTGGTTTCCTCCGAGTCCCACAGGTTCACAGATCTGCTGGACTCGTGTGGGAATCTGGATCTGGATCTGCTGTCTCCTCCACAGAAGAACTACTGGTCTCTGCTGGCCTACAACCGAGCCAAACTCTGCAACCTGCTGTTCTCCAGCGAGCTGCACCGCCGCATGTCCCCGCACGGCATCTGCTGCAACGCTCTGCATCCCGGAAACATGATGTTCACCTCCATCCACCGCAGCTGGTGGCTCCTCACGCTGCTCTTCAGCCTCGCGAGACCCTTCACCAAGTCCATGtatCTCCTCCTCATCTGTAATCTGTGTTCTGCAGTCCAACATTAGACTCATGCTGATCTGCAGATGACTTCAGCTTTGATAAGGCTGCACTCATTTTCTCATTTTCTCCTGGTAATGATGGAGTGGTCTCTGGTGCTCCACATCATGTCAGCGCACAGCAGGAGGCCAAATATTTAGGCTTTATTTcaatcatgtaaaaaaaaaaaaactgtgatattAATA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-858 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Acts upstream of or within cellular calcium ion homeostasis. Predicted to be located in cytoplasm and nucleus. Is expressed in cranial nerve II; gut; heart; and presumptive cardiac ventricle heart tube. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 12; developmental and epileptic encephalopathy 28; esophageal cancer; esophagus squamous cell carcinoma; and squamous cell carcinoma. Orthologous to human WWOX (WW domain containing oxidoreductase).

Ensembl:

ensembl_id ENSDART00000150173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049109 lncRNA downstream 170495 36726057 ~ 36790229 (-) True XLOC_024883
TCONS_00048965 lncRNA downstream 225841 36734247 ~ 36734883 (-) True XLOC_024884
TCONS_00048956 lncRNA downstream 668385 36289244 ~ 36292339 (-) True XLOC_024874
TCONS_00049449 lncRNA downstream 697620 36252084 ~ 36263104 (-) False XLOC_024872
TCONS_00048952 lncRNA downstream 697620 36258640 ~ 36263104 (-) True XLOC_024872
TCONS_00049450 lncRNA upstream 159572 37134786 ~ 37140107 (-) True XLOC_024889
TCONS_00049451 lncRNA upstream 237351 37212565 ~ 37215662 (-) True XLOC_024895
TCONS_00048980 lncRNA upstream 245811 37221025 ~ 37223777 (-) False XLOC_024896
TCONS_00049452 lncRNA upstream 296171 37271385 ~ 37273796 (-) True XLOC_024898
TCONS_00048986 lncRNA upstream 319652 37294866 ~ 37302305 (-) False XLOC_024900
TCONS_00048966 mRNA downstream 133233 36826484 ~ 36827491 (-) True XLOC_024885
TCONS_00048964 mRNA downstream 467945 36488164 ~ 36492779 (-) True XLOC_024882
TCONS_00048963 mRNA downstream 590432 36369921 ~ 36370292 (-) True XLOC_024881
TCONS_00048962 mRNA downstream 591667 36368458 ~ 36369057 (-) True XLOC_024880
TCONS_00048961 mRNA downstream 593201 36367137 ~ 36367523 (-) True XLOC_024879
TCONS_00048969 mRNA upstream 97975 37073189 ~ 37084032 (-) True XLOC_024887
TCONS_00048970 mRNA upstream 119262 37094476 ~ 37121335 (-) True XLOC_024888
TCONS_00048971 mRNA upstream 167368 37142582 ~ 37160606 (-) True XLOC_024890
TCONS_00048974 mRNA upstream 186318 37161532 ~ 37186894 (-) False XLOC_024892
TCONS_00048973 mRNA upstream 186318 37161532 ~ 37186894 (-) False XLOC_024892
TCONS_00048949 other downstream 697612 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048942 other downstream 902069 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048937 other downstream 997519 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048891 other downstream 1865612 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048871 other downstream 2705451 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048972 other upstream 169754 37144968 ~ 37145083 (-) True XLOC_024891

Expression Profile

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