RNA id: TCONS_00004675


Basic Information

Item Value
RNA id TCONS_00004675
length 3467
RNA type mRNA
GC content 0.55
exon number 27
gene id XLOC_002503
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1597270 ~ 1636452 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTCCTGTCGTCCAAATTGCTGTTGACAATTCACGCAACATTTTATACACGCGCTCAGAGAAGGGAGTTCTGCAGGTGTATGATTTGGGTGCTGATGGGCAGGGAATGAGTCGAGTGGCTGCCATTTCTCAGAGCTCCATCGTCTCTGCTGCAGGAAACATCGCCAGGACAATTGATCGCTCTGTGTTTAAGCCTATCGTTCAGATCGCAGTGATCGACCGCTCGGAGTCTTCAGACTGTCAGCTGCTGGCCGTCACTCATGCTGGTGTGCGTCTGTACTTCAGCACCATACCGTTTGCGCCACCCAACGCTAAGCATGTGTCGGCTCGACCCAGCATCCTGGCGCTGGTGCACGTGCGTCTGCCGCCAGGCTTCTCTGCGTCCTCCACCCTGCAGAAACCAGCCAAAGTGCACAAGGCTCTGTACAGCAGAGGAGTCTTGCTGATGGCCGTGTCCCAAACGGAGGACAGTGACCTGCTGTGGTGCATCAACCACGACTCCTTCCCCTTTAAAAAACCCCTCATGGAGGCTCAGATGACGGTGAATGTGGACGGCCACTCGTGGGCTTTGTGTTCAATTGAGGACAAGAAATCCCCCAGAATCCTCACTCCTCTGAATAAAGATCTCATTCCGGTCACCGATTCTCCTTTAGTCGTTCAGCAGCACAACGTCCCACCACAGAAGTTTGTCCTCTTGTCTGCTCAGGGGAGCCACATCTTCCACAAGCTGCGTCCCGTGGATCAGTTGCGCCACCTGCTGGTGAGCAGCGCTGGAGGCGAGAGCGAGGAGATTGAGAGGTTCTTCAAGCTGCACAGGGAAGAGCAGGCGTGTGCCACTGCGCTCATCCTGGCCTGCTCCAACGCCACCTGCGATCGAGAGGTGTCTGTGTGGGCAACGAGAGCCTTCTTCAGGTATGGTGGAGAGGCTCAGATGCGTTTTCCATCCGCACTGTCGGCCCCGAGTAACGTCGGACCCCTCTTCAGCTCACCTGTGccagGATCCCCCATGCCCATCGGCAGCCCATTACCAAACCCCAGTTTTCTTGCCACTCCTGCCCCAGGCATGTTTCCTCCAAATGTGTCGACCCCGTATGTTCCTGCAACTCCCATGAGCCCCGGCGGCGCCCCCATCACAGCTGTGTCCTCTGGGCCTGAagtggtcttttctggaaaacaCAACGGCATCAGTATTTACTTCACTCGTATACTCGGGAACATCTGGGACGGCAGCCTCGCAATGGAGACCCCCATAAACAAAGGCACTCAGACGGTGATGATTCTGGAGAGCACAGCCAGTTCTTCTGATCTGGAGCTCGTCCTGATGCAGCTTCAGGACTTGAAAGAGTTCCTGGACAAAAACTCACAGTTCAGTCCGACTTCCCTCGGTGTGGCAAATTTCAGCTCGCCAGCAAACCTGCAGCAAAGACTTCTGGGATTCATGCGTCCTGATGGTTCCAGCTCTCAGCAGATGCAGCAGGAGCTTCAGAGGAAGTACCAcacGGAGGCCCAGGCGTATGAGAAGGCGTCTCTCCAGGCGATGCAGCAGTTAATTCATCGCTCCTGTCAGACTCTGGCGCTCTGGAAGCTTCTGTGTGATCACCAGTTCAGCCTCATCCTCTCCGAGATGCCCAAGGAGTTCCAGGATCAGATGAAGGCTGTGAGCTTTAAGGATGTGGTGGTGTGCGGTCGAGAGCTGAGCGGTGCTTTAATCACGGCCCTCATTAACGTCTACATTAAAGACAGCGCGTCTGTGGACACACTCAGTGCTCACCTCAGGGACATCTGCCCTCTACTCTACAGCAGCGACGACAGCATCTGCTCTAAGGCCAATGAGCTGCTGCAGAGCTCCAGACAGATCCAGAACAAGCTGGAGAAGGAGCGAACGCTGAAGGAGTCTCTGCGTCTCTACCAGCAGATCAGCCACAACACAGACCTGCCGCTCGTCTGCTCGCAGTACAGACAAGTGCGCTTCTATGAGGGAGTGATGGAGCTGTGTCTCACCGCTGCCGATAAGAAGGACCATCAGAGACTCGGCCTGCACTTCTACAGGAACGGAGAGCCGGAGGAGGACACCAGCGGACAGCAGGCCTTTCAGGAGagACTCCTGTGTTATAAATGCATCACGGACACCATGCAGGAGTTGGTGAACCAGAGCAAAGCAGCCCCTCAGTCCCCCAGTGTCCCCAAACAACCCGGACCGCCTGTCATGACCTCTGACCCTAACATGCTGAGCAATGAGGACGCTGCTGCTCACTTTGAGCAGATGCTTGGTCTGGCTCAGAGGTCCCAGGACGAGCTCTTCCACATCGCTCTCTATAACTGGCTCATTCAGGCCGATCTGACGGACAAACTGCTGGAGGTGAACTCTCCATACCTGGAGGATCATTTGATGCACATGATCAAGCAGGACCAGAGTAAAGTGCGAAACATGGACCTCCTGTGGCGATACTACGAGAAGAACCGCAGCTTTGGGAAAGCGGCTCACGTTCTGGCGCGACTCGCAGACATGCACAGtaCAGAGATCTCCCTGAAGCAGCGGCTGGAGTATATCTCCAGAGCCATCCTCTCCGCCAAGAGCTCTTCCTCTGTGTCTTCACTAGGAGCCGACGGAGAGTTTCTGCATGAGCTGGAGGAGAAGATGGAGGTGGTGCGCATTCAAGTGCAGATCCAGGAGACTTTGCGCAGACAGTTTTCCCAGCATCCCTCAGTGCAGGGCGCCATCACACAGCTGGACTCTGAGCTGATGGACATCACAAAGCTCTACGGAGAGTTTGCGGATCATTTCCGGCTGTCTGAGTGTAAACTGGCTATAATTCACTGCGCGGGACATTCAGACCCCATCCTGGTGCACTCGCTGTGGCAGGAGATCATCGAGAAGGAGCTGAATGACAGTGTGGTGATGAGTCCATCAGACCGGATGCGAGCTGTGAGTCTGAAGCTGGTGTCTCTGGGGAAACTGTACGCTGGAACGCCTCGATACTTCCCGTTAGACTTCCTGGTGAAGTTTCTGGAACAGGAAGTGTGCCGGCTGAGCTGGGATGTGGGTTTTGTGACCTTCACCATGCAGGAGATTGGAGTTCAGCTGCCGAGACTGCTGGAGGTGTATGACCAGCTCTTCAAGACACGGGACCCGTGTTGGCAGCGTCTAAAGAAGCCTCTTCATCTGGTGGAGTGTATTCATGTGCTGCTCTCCGGATACGTGGACGACCCCAGCCGCGTGCCCACCTACGACAGACGCAGGTTCACCAACGCGTGTCTGGACAACATCTGTGGTTATCTGGTGGAGCTGCAGTCTCTGAGTCCCAACGCGGCGCTGCAGGACATCATCCGCAACTTCAAATCCCTGCAGGCCAAGCTGGAGAAGCTGCACTGAAGACCACCAGACTTTATAATgtaaacacactcatacagtcctggaaatgacacacacacacacacacacggctaaAATAAACTCCTCACACCTCCA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery biological_process
GO:0036228 protein localization to nuclear inner membrane biological_process
GO:0005643 nuclear pore cellular_component
GO:0044611 nuclear pore inner ring cellular_component
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko05014 Amyotrophic lateral sclerosis
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-711 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus; protein localization to nucleus; and transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery. Predicted to act upstream of or within mRNA transport; nucleocytoplasmic transport; and protein transport. Part of nuclear pore. Human ortholog(s) of this gene implicated in familial atrial fibrillation. Orthologous to human NUP155 (nucleoporin 155).

Ensembl:

ensembl_id ENSDART00000137285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004674 lncRNA downstream 44481 1544163 ~ 1552789 (-) True XLOC_002502
TCONS_00004673 lncRNA downstream 53175 1541263 ~ 1544095 (-) True XLOC_002501
TCONS_00005743 lncRNA downstream 77399 1496031 ~ 1519871 (-) True XLOC_002500
TCONS_00005969 lncRNA downstream 164130 1424728 ~ 1433140 (-) True XLOC_002499
TCONS_00005742 lncRNA downstream 170796 1423241 ~ 1426474 (-) False XLOC_002499
TCONS_00005970 lncRNA upstream 41262 1666342 ~ 1667630 (-) True XLOC_002504
TCONS_00005971 lncRNA upstream 44064 1669144 ~ 1718419 (-) False XLOC_002505
TCONS_00005972 lncRNA upstream 44064 1669144 ~ 1718424 (-) False XLOC_002505
TCONS_00005973 lncRNA upstream 53203 1678283 ~ 1741175 (-) True XLOC_002506
TCONS_00004679 lncRNA upstream 62379 1687459 ~ 1697074 (-) True XLOC_002507
TCONS_00004671 mRNA downstream 73981 1450184 ~ 1523289 (-) False XLOC_002500
TCONS_00004672 mRNA downstream 74002 1476006 ~ 1523268 (-) False XLOC_002500
TCONS_00004670 mRNA downstream 74017 1434956 ~ 1523253 (-) False XLOC_002500
TCONS_00004669 mRNA downstream 74017 1434956 ~ 1523253 (-) False XLOC_002500
TCONS_00004668 mRNA downstream 277156 1294463 ~ 1320114 (-) True XLOC_002498
TCONS_00004677 mRNA upstream 61895 1686975 ~ 1697037 (-) False XLOC_002507
TCONS_00004678 mRNA upstream 61904 1686984 ~ 1697048 (-) False XLOC_002507
TCONS_00004680 mRNA upstream 83037 1708117 ~ 1718395 (-) False XLOC_002505
TCONS_00004681 mRNA upstream 97045 1722125 ~ 1725699 (-) False XLOC_002508
TCONS_00004682 mRNA upstream 97045 1722125 ~ 1726148 (-) False XLOC_002508
TCONS_00004658 other downstream 1257243 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 1521079 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 1522880 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 1241640 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 1243398 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 1881460 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 2143571 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 3393478 5018558 ~ 5020500 (-) False XLOC_002543

Expression Profile

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