RNA id: TCONS_00005971


Basic Information

Item Value
RNA id TCONS_00005971
length 1644
lncRNA type read_through
GC content 0.46
exon number 4
gene id XLOC_002505
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1669144 ~ 1718637 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCCCCCGCCCACCGTCGGGTAATCATCGGTCTGTCTGAACCGAACTGCAGTGCAGAGCCGGAATGGGGGGCTTGGCCCCGGTCCAGCACGGTCAAAATTAGCTCTCTGTTGAATTACATGCAGTCAGCCAGTGGAAGCGGCTGAGCTCCAGTCCGGCAGCCTTGTATGGGGAGTCCAAACCCCGCAAGGCTGCCGCTCGGCTCCGCGTTCGTCCACAGACGCCTTTTCCAGCAGCAACTTTACAGCGACAGGACAAGAACAAAGGCTTCACCAGTCCCGTTTTCAGGATGACGTCGACTGGAGCAATGGGGGATCCCATTAGAGTCGACAGCTGTGTTCCTGAACCCGCCGGAGCACAGAGGAACGTCCACCAGACATCCACATTCCCTCTGTCTGATGCTGGATAAAGAACGGCCCTCAGGAGGGGGGGGAAGCGTATTCTCCgtgtatattgttttttatttcctaaaatcATGTATATCCTTATTTTGTATGGTTCTGgcgtgcggtacaggtgaaatatGATGCTGGGGCTCTTCCCTCATCTATGTGATTAATAACATTTAGACAAAACCTGGGACTCTAAGCCTTGATGATATGCTCTTCAGAGGGAACGGCAGTAAAGACACAAAAGCACCTCAAGACAGACCTGACAGACTGGAGCTTCACATGTCTGTGTTTGCAAACTGCGGGGGTCCGGGACCCTCGTGGCGGCGGCAGCAGCACGTCTTCCACTTGTCCACTTCTACTTTGCACGGCTGGACTCTTTCATACCTCtgtgaaaaaacacaaaacaaaaaaaataataatcatccaCCGGTGTTTAACAGTGTTCATGCGGTAATGATGCGATGTGGGAAACTCGAGCAGTGTTTTCTTTAGGAGGCCGATTCCAGTGTCAGGGTTCCCATAGAAATGTTAATCGATtcttaaaatgagcatttatagATCTGGTATGGTCACGGAATTTATTAGATTTGCATAAGGAGTCATGAAAAGTGCACTTGATTGGGAGCTTTTCTTTCTGAGTTTGTGCTGCTCTCAGTTATTTAATCAGCGTGACGCTAGATTTgtttcaaatacaaaaaaaaattgtattaaatcaaTGCCGAAGTCCACGTGAATTAGAAAGTAGAAGTACAGAAACTTTCATCTCAGTGTGTTGATgcatttccaactgaaactgaatatggAGTAGGGGGTGGAGCTTTATTTCAGAATGTTGATGTAcctccaactgaaatggaatatagagtggggggcggggctttatttcattgtgttgatgtacttccaactgaaatggaatattgagtagggggtggagcTTTATTTCATTGTGTATATGAACTTtcaactgaaattgaatattgagtagggggcgtgGCTTTATTTCAttgtgttgatgtactttcaattGAAATGGagtattaagtagggggcggggctttgttTCAGAACGTACTTCCAATTGAAATGGAGTATTGAGCAGGTGGTGGAcctttatttcagtgtgttgatgtactttcaacggaaatggaatattaagtagggggcggagCTTTATTTCAGAATGTACTTCCAATTGAAATGGAGTATTGAGTTGGGGgcggggctttatttcagtgtgttgatgtactt

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0019843 rRNA binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005970 lncRNA downstream 1514 1666342 ~ 1667630 (-) True XLOC_002504
TCONS_00004674 lncRNA downstream 116355 1544163 ~ 1552789 (-) True XLOC_002502
TCONS_00004673 lncRNA downstream 125049 1541263 ~ 1544095 (-) True XLOC_002501
TCONS_00005743 lncRNA downstream 149273 1496031 ~ 1519871 (-) True XLOC_002500
TCONS_00005969 lncRNA downstream 236004 1424728 ~ 1433140 (-) True XLOC_002499
TCONS_00005976 lncRNA upstream 229678 1948097 ~ 1953459 (-) True XLOC_002510
TCONS_00004699 lncRNA upstream 1048455 2766874 ~ 2772037 (-) False XLOC_002516
TCONS_00005977 lncRNA upstream 1179560 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00005978 lncRNA upstream 1603718 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00004718 lncRNA upstream 1694130 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00004676 mRNA downstream 32692 1597271 ~ 1636452 (-) True XLOC_002503
TCONS_00004675 mRNA downstream 44064 1597270 ~ 1625080 (-) False XLOC_002503
TCONS_00004671 mRNA downstream 145855 1450184 ~ 1523289 (-) False XLOC_002500
TCONS_00004672 mRNA downstream 145876 1476006 ~ 1523268 (-) False XLOC_002500
TCONS_00004669 mRNA downstream 145891 1434956 ~ 1523253 (-) False XLOC_002500
TCONS_00004681 mRNA upstream 3706 1722125 ~ 1725699 (-) False XLOC_002508
TCONS_00004682 mRNA upstream 3706 1722125 ~ 1726148 (-) False XLOC_002508
TCONS_00004683 mRNA upstream 3706 1722125 ~ 1733937 (-) True XLOC_002508
TCONS_00004684 mRNA upstream 27056 1745475 ~ 1788376 (-) False XLOC_002509
TCONS_00004685 mRNA upstream 27330 1745749 ~ 1827225 (-) True XLOC_002509
TCONS_00004658 other downstream 1329117 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 1592953 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 1594754 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 1148301 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 1150059 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 1788121 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 2050232 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 3300139 5018558 ~ 5020500 (-) False XLOC_002543

Expression Profile

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