RNA id: TU1810922


Basic Information

Item Value
RNA id TU1810922
length 214
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G1582102
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 842263 ~ 842982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttacataaagtagactatactgGTTACAtgaagtagactatacaggttacataaagtagactatacaggttacataaagtagactagacaggttacataaagtagacaaTACAGggtacataaagtagactatacaggttacataaagtagactatacaggttacataaagtagactatacagggtACATAAAGTAGACAATACAGGtcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1810919 lncRNA upstream 130 840785 ~ 842133 (+) True G1582101
TU1810862 lncRNA upstream 45061 795780 ~ 797202 (+) False trnal-cag-27
TU1810864 lncRNA upstream 45770 795780 ~ 796493 (+) False trnal-cag-27
TU1810858 lncRNA upstream 45770 795888 ~ 796493 (+) True trnal-cag-27
TU1810860 lncRNA upstream 45900 795780 ~ 796363 (+) False trnal-cag-27
TU1810923 lncRNA downstream 885 843867 ~ 891587 (+) True G1582103
TU1810947 lncRNA downstream 48105 891087 ~ 998973 (+) True G1582117
TU1810959 lncRNA downstream 92224 935206 ~ 935588 (+) True G1582127
TU1810991 lncRNA downstream 178079 1021061 ~ 1021393 (+) True G1582157
TU1811005 lncRNA downstream 205146 1048128 ~ 1048635 (+) True G1582171
XM_021619484.2 mRNA upstream 19709 820911 ~ 822554 (+) True LOC110534574
trnal-cag-27 mRNA upstream 45171 797010 ~ 797092 (+) False trnal-cag-27
XM_036953852.1 mRNA upstream 47892 783571 ~ 794371 (+) False LOC110518435
XM_036953851.1 mRNA upstream 47892 783586 ~ 794371 (+) True LOC110518435
XM_036953850.1 mRNA upstream 47893 783571 ~ 794370 (+) False LOC110518435
XM_036955455.1 mRNA downstream 7693 850675 ~ 858141 (+) True LOC110514371
XM_036953877.1 mRNA downstream 25023 868005 ~ 869609 (+) True LOC110515399
XM_036953868.1 mRNA downstream 55570 898552 ~ 901052 (+) True LOC110518152
XM_036953874.1 mRNA downstream 75903 918885 ~ 927203 (+) False LOC110515221
XM_036953873.1 mRNA downstream 76267 919249 ~ 927203 (+) True LOC110515221
TU1810551 other upstream 791072 48547 ~ 51191 (+) True LOC110516050
TU1811015 other downstream 718523 1561505 ~ 1564669 (+) True LOC110510959
TU1811023 other downstream 739109 1582091 ~ 1601733 (+) True LOC118941396
TU1812046 other downstream 1355946 2198928 ~ 2200873 (+) True G1583003
TU1812356 other downstream 1954121 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 1970892 2813874 ~ 2815294 (+) False G1583215

Expression Profile