RNA id: TU1812178


Basic Information

Item Value
RNA id TU1812178
length 317
lncRNA type read_through
GC content 0.56
exon number 2
gene id G1583087
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2225573 ~ 2251418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgagggagaggagctcaCTCTCAGAGGAGAAGTTATGAGAGAAAACATAATTGTCATAAACACAGCTGTAGttcccttggtgggagtcatctgcagcagggaagaggaaggcagcagAGTGATTGACAGCTAGCTGGGTCTGGGTTCTGGTGGAGCCGGTGAACGTGAGGAGGAAGGAGCCTCCTGGGTACTGTGGCTGAGTGGAGCAGGTGATGGTGAAGCTGTAGCCCCTGAACACCTCGGGCCCCTGGTGGCCCCTGGAGACCCCTCCCATTGAGTCAGTCAGGAAGATGTCAGGCTGGACCAGGAGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812175 lncRNA upstream 344 2224165 ~ 2225229 (+) True G1583086
TU1812112 lncRNA upstream 3309 2221479 ~ 2222264 (+) True G1583036
TU1812172 lncRNA upstream 6706 2217998 ~ 2218867 (+) True G1583083
TU1812170 lncRNA upstream 13992 2211096 ~ 2211581 (+) True G1583081
TU1812060 lncRNA upstream 19973 2012664 ~ 2205600 (+) True G1583008
TU1812197 lncRNA downstream 825 2252243 ~ 2254188 (+) False G1583101
TU1812195 lncRNA downstream 2141 2253559 ~ 2279420 (+) True G1583101
TU1812199 lncRNA downstream 7432 2258850 ~ 2524584 (+) True G1583103
TU1812206 lncRNA downstream 17090 2268508 ~ 2271352 (+) True G1583106
TU1812085 lncRNA downstream 37468 2288886 ~ 2289653 (+) False G1583025
XR_005037627.1 mRNA upstream 62311 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 349257 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 376237 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 405601 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 509484 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 485668 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 518875 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 637545 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 655399 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 748404 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 24700 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 623840 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 660904 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1267127 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2174382 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 545685 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 562456 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 562456 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 562456 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 562456 2813874 ~ 2815294 (+) False G1583215

Expression Profile