RNA id: TU1812195


Basic Information

Item Value
RNA id TU1812195
length 451
lncRNA type antisense_over
GC content 0.55
exon number 3
gene id G1583101
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2252243 ~ 2279420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagatcactgtgagtccaggaagGAGATCATAACTTCTGGAACACTCCCTCAGTGAAGACTCAGACCCAGAACAGAAAACTCCAAACCCTCTAGTGGTGTTTCCAGGTAGTGCTGAAACAGTGGAGCCACAACccagctgtctacacactactgcagcTACATCCCTCTGGTTCCAGCCAGCTCCCAcagtcctccactctccctggtcgtaccactccactccaccagcacagcgactgtctcttcccaccagcctcacatcatcaggctctgagaaaagaaaagagagagacaagccccccctgtagagctgcaggagccCCACAGCCAAGCTCCCCACAGACTACCTCTGCATCCTGTCGGTCAAAGtcagcttcacacactgaggcccaggactgattggacttcacctccactctcccagagcagagaccagctccatccacaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812134 lncRNA upstream 1072 2095249 ~ 2252487 (+) True G1583048
TU1812178 lncRNA upstream 2141 2225573 ~ 2251418 (+) True G1583087
TU1812152 lncRNA upstream 9865 2147269 ~ 2243694 (+) True G1583066
TU1812185 lncRNA upstream 21312 2231804 ~ 2232247 (+) True G1583094
TU1812181 lncRNA upstream 23016 2227146 ~ 2230543 (+) True G1583090
TU1812085 lncRNA downstream 9466 2288886 ~ 2289653 (+) False G1583025
TU1812201 lncRNA downstream 13365 2292785 ~ 2293202 (+) False G1583105
TU1812202 lncRNA downstream 13365 2292785 ~ 2293202 (+) False G1583105
TU1812203 lncRNA downstream 13365 2292785 ~ 2293202 (+) False G1583105
TU1812204 lncRNA downstream 13365 2292785 ~ 2293202 (+) False G1583105
XR_005037627.1 mRNA upstream 90297 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 377243 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 404223 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 433587 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 537470 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 457666 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 490873 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 609543 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 627397 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 720402 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 52686 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 651826 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 688890 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1295113 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2202368 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 517683 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 534454 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 534454 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 534454 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 534454 2813874 ~ 2815294 (+) False G1583215

Expression Profile