RNA id: TU1812081



Basic Information


Item Value
RNA id TU1812081
length 527
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1583025
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2288886 ~ 2639348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTAACATGATCCCACTATGGAAAGGTGAGTCTCTCAGGAACACAGACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACACTaacatgaccccactatggaaaggtgaGTCTCTCAGGAACACATACAGGTTGTTGTGATCTAGGACACAGTaacatgaccccactatggaaaggtgaGTCTCTCAGGAAGACATACAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1812324 lncRNA upstream 4660 2632088 ~ 2634022 (+) True G1583191
TU1812323 lncRNA upstream 5036 2631748 ~ 2633646 (+) True G1583190
TU1812305 lncRNA upstream 6082 2552156 ~ 2632600 (+) True G1583174
TU1812321 lncRNA upstream 13994 2624376 ~ 2624688 (+) True G1583188
TU1812051 lncRNA upstream 18975 2401929 ~ 2619707 (+) False G1583005
TU1812334 lncRNA downstream 26741 2666089 ~ 2685445 (+) True G1583199
TU1812336 lncRNA downstream 32284 2671632 ~ 2693036 (+) True G1583200
TU1812218 lncRNA downstream 39946 2679294 ~ 2679679 (+) True G1583114
TU1812338 lncRNA downstream 41215 2680563 ~ 2681115 (+) False G1583201
TU1812337 lncRNA downstream 41246 2680594 ~ 2681115 (+) False G1583201
XR_005037627.1 mRNA upstream 475420 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 762366 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 789346 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 818710 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 922593 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 97738 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 130945 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 249615 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 267469 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 360474 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 437809 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 1036949 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 1074013 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1680236 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2587491 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 157755 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 174526 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 174526 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 174526 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 174526 2813874 ~ 2815294 (+) False G1583215

Expression Profile