RNA id: TU1812218


Basic Information

Item Value
RNA id TU1812218
length 344
lncRNA type inter_gene
GC content 0.24
exon number 2
gene id G1583114
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2318097 ~ 2680206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataatcaatatcataacatttataatcaataacatcattatctctatactactaacaacataacactaatctacatcataatcaatatcataacatttataatcaataacatcatgagaggtaaacaacaacaacaaacccctttattaaaaaatgtgactaataatggaaacacttcaagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagagacactaaataagataaagaatctaagacactaaataagataaagaatctaagacacactaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812092 lncRNA upstream 32612 2452402 ~ 2646682 (+) False G1583029
TU1812081 lncRNA upstream 39946 2638682 ~ 2639348 (+) False G1583025
TU1812082 lncRNA upstream 39946 2638682 ~ 2639348 (+) True G1583025
TU1812324 lncRNA upstream 45272 2632088 ~ 2634022 (+) True G1583191
TU1812323 lncRNA upstream 45648 2631748 ~ 2633646 (+) True G1583190
TU1812338 lncRNA downstream 884 2680563 ~ 2681115 (+) False G1583201
TU1812337 lncRNA downstream 915 2680594 ~ 2681115 (+) False G1583201
TU1812340 lncRNA downstream 915 2680594 ~ 2710237 (+) True G1583201
TU1812344 lncRNA downstream 23310 2702989 ~ 2703358 (+) True G1583205
TU1812314 lncRNA downstream 23755 2703434 ~ 2885152 (+) True G1583182
XR_005037627.1 mRNA upstream 516032 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 802978 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 829958 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 859322 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 963205 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 57407 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 90614 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 209284 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 227138 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 320143 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 478421 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 1077561 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 1114625 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1720848 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2628103 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 117424 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 134195 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 134195 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 134195 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 134195 2813874 ~ 2815294 (+) False G1583215

Expression Profile