RNA id: TU1812247


Basic Information

Item Value
RNA id TU1812247
length 241
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1583136
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2415278 ~ 2477530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATtatacccaaaaccccatgttacccagaacctcATGTTACCCAGAACGCCATGTTACCCCATGAtaccaaaacccatgttaccaaaaccaaTGTTAACCCATACCCCAATTTACCCAatccccatgttacccaaaatccCATGTTTTTCTGCTGGTTTGTCACCACATTTTAAACATCAGTCCACTGCTGACCATCGatttaaaacacaaaactgaccctagatgctgatcttgggtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812116 lncRNA upstream 4127 2356719 ~ 2411151 (+) True G1583037
TU1812066 lncRNA upstream 11986 2015913 ~ 2403292 (+) True G1583012
TU1812223 lncRNA upstream 81173 2333660 ~ 2334105 (+) True G1583118
TU1812115 lncRNA upstream 106387 2308039 ~ 2308891 (+) False G1583037
TU1812139 lncRNA upstream 115518 2104981 ~ 2299760 (+) True G1583053
TU1812284 lncRNA downstream 40592 2518122 ~ 2713339 (+) True G1583163
TU1812305 lncRNA downstream 74626 2552156 ~ 2632600 (+) True G1583174
TU1812315 lncRNA downstream 135350 2612880 ~ 2885152 (+) False G1583182
TU1812052 lncRNA downstream 140222 2617752 ~ 2619707 (+) True G1583005
TU1812321 lncRNA downstream 146846 2624376 ~ 2624688 (+) True G1583188
XR_005037627.1 mRNA upstream 252016 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 538962 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 565942 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 595306 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 699189 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 259556 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 292763 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 411433 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 429287 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 522292 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 214405 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 813545 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 850609 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1456832 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2364087 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 319573 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 336344 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 336344 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 336344 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 336344 2813874 ~ 2815294 (+) False G1583215

Expression Profile