RNA id: TU1812105


Basic Information

Item Value
RNA id TU1812105
length 483
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1583034
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2430205 ~ 2457580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGTTAGCTAAGTTTTCATGTCATCGGGTGTAGTTCATAAAGGTTGAAGAGTGTATGTTAGGATGAAGTGTGAATTCATGCCAGGACTAATAAGTGTGAAGTTTGATTTCCTCCCTTCTGTAATAAGCAGCCGTATTTTTTCAAGAGGTATTTTCtcctttattcatgtgtttaatctGAACCCGTTATAACGCCGGTTAAACTGTTATGTATGTAATCACTTCAGAGTTATACCAAGCTAATAAGTCACTCGTAAGATAAGGTTGTAAGAGTGTGCTTAACTGTATTTTTCATTTACTTTATAGTTCTCACGGAAGgtgataattctgactaaaactacagaatAAAGCCGCCAGTTAAAATCAAGGAACGGTTGTGCTCGTGGTTACTGAAGGGAGCTACACAATGTAATGTTCAGGTTGACAATATCAATGGAATAGACCAAagcagagccatgtatttagatATGAACAGATATCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812116 lncRNA upstream 19054 2356719 ~ 2411151 (+) True G1583037
TU1812066 lncRNA upstream 26913 2015913 ~ 2403292 (+) True G1583012
TU1812223 lncRNA upstream 96100 2333660 ~ 2334105 (+) True G1583118
TU1812115 lncRNA upstream 121314 2308039 ~ 2308891 (+) False G1583037
TU1812139 lncRNA upstream 130445 2104981 ~ 2299760 (+) True G1583053
TU1812269 lncRNA downstream 7054 2464634 ~ 2465046 (+) True G1583151
TU1812125 lncRNA downstream 8245 2465825 ~ 2520479 (+) True G1583041
TU1812270 lncRNA downstream 14995 2472575 ~ 2473613 (+) True G1583152
TU1812284 lncRNA downstream 60542 2518122 ~ 2713339 (+) True G1583163
TU1812305 lncRNA downstream 94576 2552156 ~ 2632600 (+) True G1583174
XR_005037627.1 mRNA upstream 266943 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 553889 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 580869 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 610233 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 714116 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 279506 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 312713 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 431383 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 449237 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 542242 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 229332 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 828472 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 865536 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1471759 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2379014 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 339523 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 356294 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 356294 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 356294 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 356294 2813874 ~ 2815294 (+) False G1583215

Expression Profile