RNA id: TU1812265


Basic Information

Item Value
RNA id TU1812265
length 225
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1583147
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2454755 ~ 2455117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGACACATCCTGTTTTTCACCATCTGCAGGGACTCCACTGTGTGGAAATCTGTTAGAAATCATCAATGACATCACATCAACTCACAAGTATCACAGTCGGATAGAAATTAACACTTGGTAGACTATATAACTTAAACATTCATGGTGGTGAAATTAACACTTGGTAGACTATATAACTTAAACATTCATGGTGGTGACATTAACACTTGGTAGACTATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812095 lncRNA upstream 1839 2452017 ~ 2452916 (+) False G1583029
TU1812098 lncRNA upstream 1839 2452402 ~ 2452916 (+) True G1583029
TU1812087 lncRNA upstream 3008 2079276 ~ 2451747 (+) True G1583027
TU1812017 lncRNA upstream 19762 2414920 ~ 2434993 (+) True G1582984
TU1812116 lncRNA upstream 43604 2356719 ~ 2411151 (+) True G1583037
TU1812269 lncRNA downstream 9517 2464634 ~ 2465046 (+) True G1583151
TU1812125 lncRNA downstream 10708 2465825 ~ 2520479 (+) True G1583041
TU1812270 lncRNA downstream 17458 2472575 ~ 2473613 (+) True G1583152
TU1812284 lncRNA downstream 63005 2518122 ~ 2713339 (+) True G1583163
TU1812305 lncRNA downstream 97039 2552156 ~ 2632600 (+) True G1583174
XR_005037627.1 mRNA upstream 291493 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 578439 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 605419 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 634783 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 738666 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 281969 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 315176 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 433846 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 451700 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 544705 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 253882 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 853022 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 890086 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1496309 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2403564 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 341986 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 358757 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 358757 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 358757 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 358757 2813874 ~ 2815294 (+) False G1583215

Expression Profile