RNA id: TU1812284


Basic Information

Item Value
RNA id TU1812284
length 254
lncRNA type read_through
GC content 0.52
exon number 2
gene id G1583163
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2518122 ~ 2713339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagcagatcactgtgagtccaggaagGAGATCATCTGATCTTCCACACTCCCTCAGTGAAGACTCAGACCCAGAACAGGAAACTCTAATCCCTATAGTGGTGTTTCCAGGTGGTACTGAAACAGTGGAGCCACAACCcatctgtctacacactactgcagcTACATTCTCCTTGTTCCAGTCAGCTCCCACAatcctccactctccctggtcgtaccactccactccaccagcacagcgactgcctcctccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812247 lncRNA upstream 40592 2415278 ~ 2477530 (+) True G1583136
TU1812270 lncRNA upstream 44509 2472575 ~ 2473613 (+) True G1583152
TU1812248 lncRNA upstream 50981 2418102 ~ 2467141 (+) True G1583137
TU1812269 lncRNA upstream 53076 2464634 ~ 2465046 (+) True G1583151
TU1812117 lncRNA upstream 59246 2308039 ~ 2458876 (+) False G1583037
TU1812351 lncRNA downstream 16492 2729831 ~ 2730727 (+) True G1583212
TU1812384 lncRNA downstream 44507 2757846 ~ 2758239 (+) True G1583230
TU1812366 lncRNA downstream 51860 2765199 ~ 2815294 (+) False G1583215
TU1812389 lncRNA downstream 53574 2766913 ~ 2767609 (+) True G1583235
TU1812393 lncRNA downstream 77242 2790581 ~ 2791419 (+) True G1583238
XR_005037627.1 mRNA upstream 354860 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 641806 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 668786 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 698150 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 802033 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 23747 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 56954 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 175624 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 193478 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 286483 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 317249 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 916389 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 953453 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1559676 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2466931 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 83764 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 100535 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 100535 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 100535 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 100535 2813874 ~ 2815294 (+) False G1583215

Expression Profile