RNA id: TU1812351


Basic Information

Item Value
RNA id TU1812351
length 200
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G1583212
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2729831 ~ 2730727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagaatggccctagccctcaccctccgatccaacaggtcccagacgtgccctagccctcaccctcctatccaacaggtcccagacgtgctcaatgggactgagatcctggctcttcgctgaccatggcaaaacactggtattcctgtcttgcaggaaatcatacacagaatgagcagtatggctggtggcattgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812284 lncRNA upstream 16492 2518122 ~ 2713339 (+) True G1583163
TU1812340 lncRNA upstream 19594 2680594 ~ 2710237 (+) True G1583201
TU1812227 lncRNA upstream 25401 2351645 ~ 2704430 (+) True G1583120
TU1812344 lncRNA upstream 26473 2702989 ~ 2703358 (+) True G1583205
TU1812336 lncRNA upstream 36795 2671632 ~ 2693036 (+) True G1583200
TU1812384 lncRNA downstream 27119 2757846 ~ 2758239 (+) True G1583230
TU1812366 lncRNA downstream 34472 2765199 ~ 2815294 (+) False G1583215
TU1812389 lncRNA downstream 36186 2766913 ~ 2767609 (+) True G1583235
TU1812393 lncRNA downstream 59854 2790581 ~ 2791419 (+) True G1583238
TU1812411 lncRNA downstream 66557 2797284 ~ 2798738 (+) False G1583241
XR_005037627.1 mRNA upstream 566569 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 853515 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 880495 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 909859 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 1013742 1716018 ~ 1716089 (+) True trnae-cuc-281
XR_005037626.1 mRNA downstream 6359 2737086 ~ 2770154 (+) True LOC118941408
XM_036955460.1 mRNA downstream 39566 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 158236 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 176090 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 269095 2999822 ~ 3000856 (+) False LOC118941407
TU1812046 other upstream 528958 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 1128098 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 1165162 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1771385 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2678640 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 66376 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 83147 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 83147 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 83147 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 83147 2813874 ~ 2815294 (+) False G1583215

Expression Profile