RNA id: TU1812485


Basic Information

Item Value
RNA id TU1812485
length 329
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1583280
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2918392 ~ 2921472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTACACcacatccccccttctcctgctctaacatgagacctcatcagtactcattttgggtgctggtactgtttatatttaggtgctggaacattaagccaatattctataagaggtgaactcaagcagtagaaagttagaggtgatattataggacacactatgtgtaactttgctgctctgtcagcagtttcctgtggaaTTTTTcaaatgtcagtctctcctgtAGGTAGGTGTGTTTAACTGATCTTATCTGCTTAAAGGTTTGTCACATCATATAAGTAAGGAAGAGATGAGCTAGAAGTCATGTAGCCTAGCAATATTTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812443 lncRNA upstream 8910 2908218 ~ 2909482 (+) True LOC118941401
TU1812467 lncRNA upstream 11866 2905825 ~ 2906526 (+) True LOC118941397
TU1812237 lncRNA upstream 23829 2894005 ~ 2894563 (+) False G1583129
TU1812238 lncRNA upstream 23829 2894005 ~ 2894563 (+) True G1583129
TU1812447 lncRNA upstream 41172 2876427 ~ 2877220 (+) True G1583261
TU1812493 lncRNA downstream 18804 2940276 ~ 2941372 (+) True G1583288
TU1812497 lncRNA downstream 29571 2951043 ~ 2951634 (+) True G1583291
TU1812440 lncRNA downstream 30175 2951647 ~ 3001920 (+) True LOC118941407
TU1812304 lncRNA downstream 31626 2953098 ~ 2954024 (+) True G1583173
TU1812500 lncRNA downstream 35944 2957416 ~ 2957903 (+) True G1583294
XM_036953916.1 mRNA upstream 9478 2906817 ~ 2908914 (+) False LOC118941401
XM_036955460.1 mRNA upstream 106700 2770293 ~ 2811692 (+) False LOC110518136
XR_005037626.1 mRNA upstream 148238 2737086 ~ 2770154 (+) True LOC118941408
XR_005037627.1 mRNA upstream 755130 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 1042076 1875632 ~ 1876316 (+) True LOC110497256
XR_005037624.1 mRNA downstream 78350 2999822 ~ 3000856 (+) False LOC118941407
XM_036953927.1 mRNA downstream 111001 3032473 ~ 3091701 (+) False LOC110517772
XM_036953926.1 mRNA downstream 111267 3032739 ~ 3091701 (+) False LOC110517772
XM_036953925.1 mRNA downstream 111268 3032740 ~ 3091701 (+) False LOC110517772
XM_036953928.1 mRNA downstream 183927 3105399 ~ 3119992 (+) False LOC110510463
TU1812241 other upstream 27586 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 27664 2889026 ~ 2890728 (+) False LOC118941397
TU1812365 other upstream 103098 2813874 ~ 2815294 (+) False G1583215
TU1812930 other downstream 111047 3032519 ~ 3071643 (+) False LOC110517772
TU1813281 other downstream 511244 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 511244 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 562174 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 696366 3617838 ~ 3622788 (+) False LOC110497294

Expression Profile