RNA id: TU1812963


Basic Information

Item Value
RNA id TU1812963
length 355
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1583648
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3095425 ~ 3097219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtggtatgtaatagtggtatatagatggtggtatgtattagtggtatatagatggtggtatgtaatagtggtatatagttggtggtatgtaatagtggtatatagatggtggtatgtaatagtggtatatagatggtggtatgtaatagtggtatatagttggtggtgtgtattagtggtatatagatggtggtatgtaatagtggtatatagatggtggtatgtaatagtggtatatagatggtggtatgtaatagtggtatatagatggtggtatgtagtagtggtatatagatggtggtatgtaatagtggtatatagatggtggtgtgtattagtggtatatagatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812929 lncRNA upstream 3996 3089534 ~ 3091429 (+) True LOC110517772
TU1812933 lncRNA upstream 9110 3084864 ~ 3086315 (+) False LOC110517772
TU1812959 lncRNA upstream 12136 3083076 ~ 3083289 (+) True G1583644
TU1812958 lncRNA upstream 14087 3081025 ~ 3081338 (+) True G1583643
TU1812899 lncRNA upstream 86470 3007739 ~ 3008955 (+) True G1583609
TU1812980 lncRNA downstream 384 3097603 ~ 3101021 (+) True G1583653
TU1812983 lncRNA downstream 7271 3104490 ~ 3104806 (+) True G1583655
TU1812986 lncRNA downstream 16763 3113982 ~ 3114264 (+) True G1583658
TU1812971 lncRNA downstream 21018 3118237 ~ 3119894 (+) True LOC110510463
TU1813004 lncRNA downstream 56660 3153879 ~ 3154202 (+) True G1583675
XM_036953927.1 mRNA upstream 3724 3032473 ~ 3091701 (+) False LOC110517772
XM_036953926.1 mRNA upstream 3724 3032739 ~ 3091701 (+) False LOC110517772
XM_036953925.1 mRNA upstream 3724 3032740 ~ 3091701 (+) False LOC110517772
XM_036953909.1 mRNA upstream 92369 2888963 ~ 3003056 (+) False LOC118941397
XR_005037624.1 mRNA upstream 94569 2999822 ~ 3000856 (+) False LOC118941407
XM_036953928.1 mRNA downstream 8180 3105399 ~ 3119992 (+) False LOC110510463
XM_036953929.1 mRNA downstream 8180 3105399 ~ 3128798 (+) False LOC110510463
XM_036953932.1 mRNA downstream 39429 3136648 ~ 3139833 (+) True LOC110511406
trnae-cuc-282 mRNA downstream 124699 3221918 ~ 3221989 (+) True trnae-cuc-282
trnae-cuc-283 mRNA downstream 124880 3222099 ~ 3222170 (+) True trnae-cuc-283
TU1812930 other upstream 23782 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 204619 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 204697 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 280131 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 335497 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 335497 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 386427 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 520619 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 543430 3640649 ~ 3642876 (+) True G1583951

Expression Profile