RNA id: TU1812983


Basic Information

Item Value
RNA id TU1812983
length 226
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1583655
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3104490 ~ 3104806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttaacccttttagctaacccttcccctaaccttaaccctttacctaacccttcccctaaccctaaccgtaaccctttagctaacccttcccctaaccctaaccttaacccctttagctaacccttcccctaaccttaacccctttagctaacccttcccctaaccttaacccctttagctaacccttcccctgaccttaacccttcccctgaccttaacccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812980 lncRNA upstream 3469 3097603 ~ 3101021 (+) True G1583653
TU1812963 lncRNA upstream 7271 3095425 ~ 3097219 (+) True G1583648
TU1812964 lncRNA upstream 7529 3096163 ~ 3096961 (+) False G1583649
TU1812965 lncRNA upstream 7952 3096163 ~ 3096538 (+) True G1583649
TU1812929 lncRNA upstream 13061 3089534 ~ 3091429 (+) True LOC110517772
TU1812986 lncRNA downstream 9176 3113982 ~ 3114264 (+) True G1583658
TU1812971 lncRNA downstream 13431 3118237 ~ 3119894 (+) True LOC110510463
TU1813004 lncRNA downstream 49073 3153879 ~ 3154202 (+) True G1583675
TU1813023 lncRNA downstream 87086 3191892 ~ 3193229 (+) True G1583686
TU1813187 lncRNA downstream 185451 3290257 ~ 3290466 (+) True G1583783
XM_036953927.1 mRNA upstream 12789 3032473 ~ 3091701 (+) False LOC110517772
XM_036953926.1 mRNA upstream 12789 3032739 ~ 3091701 (+) False LOC110517772
XM_036953925.1 mRNA upstream 12789 3032740 ~ 3091701 (+) False LOC110517772
XR_005037624.1 mRNA upstream 103634 2999822 ~ 3000856 (+) False LOC118941407
XM_036953916.1 mRNA upstream 195576 2906817 ~ 2908914 (+) False LOC118941401
XM_036953928.1 mRNA downstream 593 3105399 ~ 3119992 (+) False LOC110510463
XM_036953929.1 mRNA downstream 593 3105399 ~ 3128798 (+) False LOC110510463
XM_036953932.1 mRNA downstream 31842 3136648 ~ 3139833 (+) True LOC110511406
trnae-cuc-282 mRNA downstream 117112 3221918 ~ 3221989 (+) True trnae-cuc-282
trnae-cuc-283 mRNA downstream 117293 3222099 ~ 3222170 (+) True trnae-cuc-283
TU1812930 other upstream 32847 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 213684 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 213762 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 289196 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 327910 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 327910 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 378840 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 513032 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 535843 3640649 ~ 3642876 (+) True G1583951

Expression Profile