RNA id: TU1813240


Basic Information

Item Value
RNA id TU1813240
length 248
lncRNA type read_through
GC content 0.40
exon number 2
gene id G1583811
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3323582 ~ 3372508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcTACAGTTTAAAATtgaaatgcttgtgtttctagctccatcagggcagtaatacctactgtaacacagtgaaatgcctatgtttctagctccatcagggcagtaatacctactgtaacagtgaaatgcttgtgtttctagctccatcagggcagtaatacctactgtaacacagtgaaatgcttgtgtttctagctccatcagggcagtaatacctactgtaacacagtgaaatgcttgtgtttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813223 lncRNA upstream 8781 3313059 ~ 3314801 (+) True LOC110534750
TU1813187 lncRNA upstream 33116 3290257 ~ 3290466 (+) True G1583783
TU1813023 lncRNA upstream 130353 3191892 ~ 3193229 (+) True G1583686
TU1813004 lncRNA upstream 169380 3153879 ~ 3154202 (+) True G1583675
TU1812971 lncRNA upstream 203688 3118237 ~ 3119894 (+) True LOC110510463
TU1813301 lncRNA downstream 5568 3378076 ~ 3378327 (+) True G1583840
TU1813302 lncRNA downstream 5864 3378372 ~ 3378600 (+) True G1583841
TU1813291 lncRNA downstream 18844 3391352 ~ 3392600 (+) True G1583830
TU1813275 lncRNA downstream 66404 3438912 ~ 3444191 (+) True G1583825
TU1813290 lncRNA downstream 90162 3462670 ~ 3462924 (+) False LOC110497285
XM_036953938.1 mRNA upstream 6141 3314868 ~ 3317441 (+) True LOC110534763
XM_036953933.1 mRNA upstream 8757 3309693 ~ 3314825 (+) False LOC110534750
XM_036953807.1 mRNA upstream 15354 3303563 ~ 3308228 (+) True LOC110513657
XM_021596462.2 mRNA upstream 28051 3290812 ~ 3295531 (+) True LOC110519316
trnae-cuc-374 mRNA upstream 33465 3290046 ~ 3290117 (+) True trnae-cuc-374
XM_036953950.1 mRNA downstream 33965 3406473 ~ 3414777 (+) False LOC110497278
XM_036953948.1 mRNA downstream 34147 3406655 ~ 3457336 (+) False LOC110497278
XM_036953951.1 mRNA downstream 43695 3416203 ~ 3426349 (+) False LOC110534752
XM_036953952.1 mRNA downstream 43695 3416203 ~ 3426349 (+) False LOC110534752
XM_036953953.1 mRNA downstream 43695 3416203 ~ 3426349 (+) False LOC110534752
TU1812930 other upstream 251939 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 432776 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 432854 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 508288 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 60208 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 60208 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 111138 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 245330 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 268141 3640649 ~ 3642876 (+) True G1583951

Expression Profile