RNA id: TU1813246


Basic Information

Item Value
RNA id TU1813246
length 300
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1583817
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3362651 ~ 3363004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttggaacaccttcctaatattgagttgaacccccCCTTTGCTCTTAGAAAAGTCTCAAttggtcggggcatggactctacaaggtgttgtaaGACGCTCCCCACTCCCTTTCACCCTCAGAACGGCCTCAGTTCTTCagaacatggactctacaaggtgttgtaagactctccccactccctttcaccctcagaacagcctcagttcttcagaacatggactctacaaggtgttgtaaGCGTTCAATaaggatgctggtccatgttgccTCCaaggcttcccacagttgtgtcaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813227 lncRNA upstream 7826 3351828 ~ 3354825 (+) True LOC118941411
TU1813223 lncRNA upstream 47850 3313059 ~ 3314801 (+) True LOC110534750
TU1813187 lncRNA upstream 72185 3290257 ~ 3290466 (+) True G1583783
TU1813023 lncRNA upstream 169422 3191892 ~ 3193229 (+) True G1583686
TU1813004 lncRNA upstream 208449 3153879 ~ 3154202 (+) True G1583675
TU1813301 lncRNA downstream 15072 3378076 ~ 3378327 (+) True G1583840
TU1813302 lncRNA downstream 15368 3378372 ~ 3378600 (+) True G1583841
TU1813291 lncRNA downstream 28348 3391352 ~ 3392600 (+) True G1583830
TU1813275 lncRNA downstream 75908 3438912 ~ 3444191 (+) True G1583825
TU1813290 lncRNA downstream 99666 3462670 ~ 3462924 (+) False LOC110497285
XM_021573316.2 mRNA upstream 1356 3357812 ~ 3361295 (+) True LOC110497283
XR_005037629.1 mRNA upstream 7254 3349758 ~ 3355397 (+) False LOC118941411
XR_005037628.1 mRNA upstream 7255 3351186 ~ 3355396 (+) False LOC118941411
XM_036953937.1 mRNA upstream 13704 3346348 ~ 3348947 (+) True LOC110534762
XM_036953934.1 mRNA upstream 17788 3339844 ~ 3344863 (+) True LOC110534760
XM_036953950.1 mRNA downstream 43469 3406473 ~ 3414777 (+) False LOC110497278
XM_036953948.1 mRNA downstream 43651 3406655 ~ 3457336 (+) False LOC110497278
XM_036953951.1 mRNA downstream 53199 3416203 ~ 3426349 (+) False LOC110534752
XM_036953952.1 mRNA downstream 53199 3416203 ~ 3426349 (+) False LOC110534752
XM_036953953.1 mRNA downstream 53199 3416203 ~ 3426349 (+) False LOC110534752
TU1812930 other upstream 291008 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 471845 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 471923 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 547357 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 69712 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 69712 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 120642 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 254834 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 277645 3640649 ~ 3642876 (+) True G1583951

Expression Profile