RNA id: TU1813291


Basic Information

Item Value
RNA id TU1813291
length 746
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1583830
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3391352 ~ 3392600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcgacaagctgaccagaCGGTTTATCTGTCACGGCAAAACCCCAAGGGTTGGCCTGGATAAACTGACCCTTGATTACGGCCAAGGAGGCTTAAACCTCCCCAATTTCAGAATGTACAATTGGACTGCAGTCTAGATGTCTAGCTCAGAGATTTGACAATGGTCCCTCTCCCTCATGGTTGAACAGTTTGGAGGCGTATTCCATGGAAGCGATTGTGGACGGACCCCTCTGAAAACTTTGTTCTCTCCGCTCGAAATCTGGTGATCTGAAGTTCCATCAATTTCATTTTCCTCCGGAGAAATTCATTCTCCTTGTGGCTTTGGGACATTTTCAGATGTACAACAGCATAGCCATCGTCAACAACTTTGCAGATTTCGGTTACAGCCGCGTTGGCTAGCACCTCCATGATTGAGGCTATCTGCGCCTGGAACTCGACCACGGAACCCGACATTGTCCCCCGACTCTTTTTGCCCCTTTTCAATGTAACAGTATTTGCGTTTTATATATTATGATGATCTACAGTTATCTACCAATCTATTAAAACAAATAATCATAACAGAAACTTAACGTCAATTTGCAGCTAGCTTTGTTTGTAGCTAGCTGGtgagatgttttattttatttcctcACGTCACAGTAATGTAATCATACGTGGACTGTAGAATTTAAAGTTGaacaccgccacctactgtacaggaGTGCGGCACAACAATGTTGTACCTACGTAATAAACAACATGTTCTCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813302 lncRNA upstream 12752 3378372 ~ 3378600 (+) True G1583841
TU1813301 lncRNA upstream 13025 3378076 ~ 3378327 (+) True G1583840
TU1813240 lncRNA upstream 18844 3323582 ~ 3372508 (+) True G1583811
TU1813246 lncRNA upstream 28348 3362651 ~ 3363004 (+) True G1583817
TU1813227 lncRNA upstream 36527 3351828 ~ 3354825 (+) True LOC118941411
TU1813275 lncRNA downstream 46312 3438912 ~ 3444191 (+) True G1583825
TU1813290 lncRNA downstream 70070 3462670 ~ 3462924 (+) False LOC110497285
TU1813256 lncRNA downstream 77211 3469811 ~ 3470376 (+) False LOC110497285
TU1813257 lncRNA downstream 77211 3469811 ~ 3470512 (+) False LOC110497285
TU1813259 lncRNA downstream 77211 3469811 ~ 3470625 (+) True LOC110497285
XM_021573316.2 mRNA upstream 30057 3357812 ~ 3361295 (+) True LOC110497283
XR_005037629.1 mRNA upstream 35955 3349758 ~ 3355397 (+) False LOC118941411
XR_005037628.1 mRNA upstream 35956 3351186 ~ 3355396 (+) False LOC118941411
XM_036953937.1 mRNA upstream 42405 3346348 ~ 3348947 (+) True LOC110534762
XM_036953934.1 mRNA upstream 46489 3339844 ~ 3344863 (+) True LOC110534760
XM_036953950.1 mRNA downstream 13873 3406473 ~ 3414777 (+) False LOC110497278
XM_036953948.1 mRNA downstream 14055 3406655 ~ 3457336 (+) False LOC110497278
XM_036953951.1 mRNA downstream 23603 3416203 ~ 3426349 (+) False LOC110534752
XM_036953952.1 mRNA downstream 23603 3416203 ~ 3426349 (+) False LOC110534752
XM_036953953.1 mRNA downstream 23603 3416203 ~ 3426349 (+) False LOC110534752
TU1812930 other upstream 319709 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 500546 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 500624 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 576058 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 40116 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 40116 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 91046 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 225238 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 248049 3640649 ~ 3642876 (+) True G1583951

Expression Profile