RNA id: TU1813355


Basic Information

Item Value
RNA id TU1813355
length 350
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1583891
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3518913 ~ 3520091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaggacagagaggagagagagggaagatacacacagagaggagagaggagagagagggaagatacacacagagaggacagagagggaagatacacacagagcggagagaggagagagagggaagatacacacagagaggagagaggaaagatacACACAGAgcggagaggacagagaggagagacaagtcagagaggagagagaggacagagaggacagaggtcagagagggaagatacacacagaggagagagaggagagagagggaagatacacacagaggagagagaggagagagagggaagatacacacagaggagagagaggagagagagggaagatacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813337 lncRNA upstream 35655 3483048 ~ 3483258 (+) True G1583873
TU1813326 lncRNA upstream 37454 3480587 ~ 3481459 (+) True LOC110497287
TU1813323 lncRNA upstream 47888 3470797 ~ 3471025 (+) True G1583862
TU1813259 lncRNA upstream 48288 3469811 ~ 3470625 (+) True LOC110497285
TU1813257 lncRNA upstream 48401 3469811 ~ 3470512 (+) False LOC110497285
TU1813357 lncRNA downstream 3944 3524035 ~ 3524339 (+) True G1583893
TU1813363 lncRNA downstream 17276 3537367 ~ 3537790 (+) False G1583898
TU1813362 lncRNA downstream 17377 3537468 ~ 3537790 (+) True G1583898
TU1813366 lncRNA downstream 18173 3538264 ~ 3539765 (+) True G1583899
TU1813368 lncRNA downstream 27001 3547092 ~ 3547490 (+) True G1583901
XM_021573345.2 mRNA upstream 2458 3507304 ~ 3516455 (+) True LOC110497299
XM_021573326.2 mRNA upstream 20182 3492742 ~ 3498731 (+) True LOC110497290
XM_036953972.1 mRNA upstream 26436 3483359 ~ 3492477 (+) False LOC110497289
XM_036953971.1 mRNA upstream 26436 3483362 ~ 3492477 (+) False LOC110497289
XM_036953973.1 mRNA upstream 30136 3483405 ~ 3488777 (+) False LOC110497289
XM_036953977.1 mRNA downstream 89487 3609578 ~ 3622792 (+) False LOC110497294
XM_036953978.1 mRNA downstream 89490 3609581 ~ 3620866 (+) False LOC110497294
XM_036953986.1 mRNA downstream 167900 3687991 ~ 3692012 (+) False LOC118941415
XM_036953988.1 mRNA downstream 392396 3912487 ~ 4229364 (+) True LOC110534570
XM_036953989.1 mRNA downstream 860031 4380122 ~ 4385135 (+) True LOC118941416
TU1813330 other upstream 33493 3483646 ~ 3485420 (+) True LOC110497289
TU1813281 other upstream 83301 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other upstream 83301 3432716 ~ 3435612 (+) True LOC110534752
TU1812930 other upstream 447270 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 628107 2889284 ~ 2890806 (+) False LOC118941397
TU1813430 other downstream 97747 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 120558 3640649 ~ 3642876 (+) True G1583951
TU1813473 other downstream 168077 3688168 ~ 3690984 (+) True LOC118941415
TU1813928 other downstream 542577 4062668 ~ 4063226 (+) True G1584344
TU1814367 other downstream 1028464 4548555 ~ 4549189 (+) True LOC110514758

Expression Profile