RNA id: TU1813374


Basic Information

Item Value
RNA id TU1813374
length 497
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1583904
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3552202 ~ 3552698 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACtcccagatagagggagagggagagctacACCACTCccagatagcgagagagagctaCAGGAGCTGTGAATGAGTGCGGGAGCGTAGGGGGAAAAAATTACACTCGAGCTGTACCCCCAGCCAATGGAAAACAAGAGAAAATGGCGCCAAAAATAGCATTGTTTTTCTGCCACCTGCAGTAGAGGCAGTAACAGTATGGTAGAGATAGTCCAGGTCTAGTCTGTAGTAGAATCCTCAGAGAGAAAGGAACAAATGTAGGCAGAAACACtgacgatgatgatgaagatAATCTCTTCTTCAGAGGATCAGCGGTAGTATGCAATGTCCCCTAGTgatgcctcacacacacacagccgcgcacacagacacacacactgcaacaaacacacactgcagcaTTTGGGACCAATAGGCGTTAGAGGTTCtctttcacacaaacacacggttAGACAAAGCTCAGCCTCGGCATCTCTGTGTATCTCACATTGGTTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813370 lncRNA upstream 689 3549788 ~ 3551513 (+) False G1583903
TU1813371 lncRNA upstream 689 3549788 ~ 3551513 (+) False G1583903
TU1813373 lncRNA upstream 689 3550692 ~ 3551513 (+) True G1583903
TU1813372 lncRNA upstream 993 3549788 ~ 3551209 (+) False G1583903
TU1813368 lncRNA upstream 4712 3547092 ~ 3547490 (+) True G1583901
TU1813377 lncRNA downstream 3162 3555860 ~ 3556138 (+) True G1583906
TU1813379 lncRNA downstream 7707 3560405 ~ 3560720 (+) True G1583908
TU1813383 lncRNA downstream 15060 3567758 ~ 3568079 (+) True G1583912
TU1813386 lncRNA downstream 19391 3572089 ~ 3572809 (+) True G1583915
TU1813410 lncRNA downstream 68708 3621406 ~ 3622788 (+) False LOC110497294
XM_021573345.2 mRNA upstream 35747 3507304 ~ 3516455 (+) True LOC110497299
XM_021573326.2 mRNA upstream 53471 3492742 ~ 3498731 (+) True LOC110497290
XM_036953972.1 mRNA upstream 59725 3483359 ~ 3492477 (+) False LOC110497289
XM_036953977.1 mRNA downstream 56880 3609578 ~ 3622792 (+) False LOC110497294
XM_036953978.1 mRNA downstream 56883 3609581 ~ 3620866 (+) False LOC110497294
XM_036953986.1 mRNA downstream 135293 3687991 ~ 3692012 (+) False LOC118941415
XM_036953988.1 mRNA downstream 359789 3912487 ~ 4229364 (+) True LOC110534570
XM_036953989.1 mRNA downstream 827424 4380122 ~ 4385135 (+) True LOC118941416
TU1813330 other upstream 66782 3483646 ~ 3485420 (+) True LOC110497289
TU1813281 other upstream 116590 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other upstream 116590 3432716 ~ 3435612 (+) True LOC110534752
TU1812930 other upstream 480559 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 661396 2889284 ~ 2890806 (+) False LOC118941397
TU1813430 other downstream 65140 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 87951 3640649 ~ 3642876 (+) True G1583951
TU1813473 other downstream 135470 3688168 ~ 3690984 (+) True LOC118941415
TU1813928 other downstream 509970 4062668 ~ 4063226 (+) True G1584344
TU1814367 other downstream 995857 4548555 ~ 4549189 (+) True LOC110514758

Expression Profile