RNA id: TU1814278


Basic Information

Item Value
RNA id TU1814278
length 218
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1584668
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4329195 ~ 4329412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggccacaccaattacttttgattttgaccccacttttgttcagggacacattattctatttatgctagtcacatgtttgtggaacttgttcagtttatgtctcagttgatgaatcttatgttcatacaaatatttacacgttaagtttgctgaaaataaacatagttgacagtgagaggacgtttcattttttgctgagtttatttgtgagaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814271 lncRNA upstream 5138 4323611 ~ 4324057 (+) True G1584661
TU1814037 lncRNA upstream 27392 4301589 ~ 4301803 (+) True G1584450
TU1814006 lncRNA upstream 76058 4252784 ~ 4253137 (+) True G1584419
TU1813980 lncRNA upstream 140236 4188556 ~ 4188959 (+) True G1584395
TU1813925 lncRNA upstream 269392 4059144 ~ 4059803 (+) True G1584342
TU1814283 lncRNA downstream 1671 4331083 ~ 4331381 (+) True G1584673
TU1814306 lncRNA downstream 27230 4356642 ~ 4800428 (+) False G1584695
TU1814307 lncRNA downstream 27230 4356642 ~ 4800428 (+) True G1584695
TU1814330 lncRNA downstream 72448 4401860 ~ 4402232 (+) True LOC118941417
TU1814336 lncRNA downstream 89381 4418793 ~ 4419266 (+) True LOC118941418
XM_036953988.1 mRNA upstream 99831 3912487 ~ 4229364 (+) True LOC110534570
XM_036953986.1 mRNA upstream 637183 3687991 ~ 3692012 (+) False LOC118941415
XM_036953977.1 mRNA upstream 706403 3609578 ~ 3622792 (+) False LOC110497294
XM_036953978.1 mRNA upstream 708329 3609581 ~ 3620866 (+) False LOC110497294
XM_021573345.2 mRNA upstream 812740 3507304 ~ 3516455 (+) True LOC110497299
XM_036953989.1 mRNA downstream 50710 4380122 ~ 4385135 (+) True LOC118941416
XM_036953990.1 mRNA downstream 71248 4400660 ~ 4404928 (+) False LOC118941417
XM_036953991.1 mRNA downstream 89289 4418701 ~ 4423685 (+) False LOC118941418
XM_036953992.1 mRNA downstream 89289 4418701 ~ 4423685 (+) False LOC118941418
XR_005037632.1 mRNA downstream 89289 4418701 ~ 4423685 (+) False LOC118941418
TU1813928 other upstream 265969 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 638211 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 686319 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 706407 3617838 ~ 3622788 (+) False LOC110497294
TU1813330 other upstream 843775 3483646 ~ 3485420 (+) True LOC110497289
TU1814367 other downstream 219143 4548555 ~ 4549189 (+) True LOC110514758
TU1814555 other downstream 792579 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 792579 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 792579 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 1100885 5430297 ~ 5470223 (+) False LOC110497310

Expression Profile