RNA id: TU1814316


Basic Information

Item Value
RNA id TU1814316
length 366
lncRNA type read_through
GC content 0.42
exon number 5
gene id G1584698
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4520917 ~ 4800849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctttagtcaggttgttgtatctggtctgtagctggtctctctcttcagtcaggttgttgtatctggtctgtagctggtctctctctttagtcaggttgttgtatctggtctgtaactggtctctctctttagtcaggatgTTGTATCTGatctgtaactggtctctctctttattcaggttgttgtatctggtctgtaactggtctctctctttagtcaggttgttgtatctggtctgtagctggtctctctctgcagttgTGTTGATTTTATAAAGGGAGAAACTCTGGAACAAGTTATTCCTTTTATCCTCAAAATCTTTGATGACTCTGTTAtagacagacaggcctatgatcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814356 lncRNA upstream 33182 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 33301 4487164 ~ 4487616 (+) True G1584731
TU1814336 lncRNA upstream 101651 4418793 ~ 4419266 (+) True LOC118941418
TU1814330 lncRNA upstream 118685 4401860 ~ 4402232 (+) True LOC118941417
TU1814283 lncRNA upstream 189536 4331083 ~ 4331381 (+) True G1584673
TU1814520 lncRNA downstream 119944 4920793 ~ 4921499 (+) True G1584869
TU1814567 lncRNA downstream 281170 5082019 ~ 5083416 (+) True LOC110498597
TU1814569 lncRNA downstream 287960 5088809 ~ 5090649 (+) True G1584906
TU1814570 lncRNA downstream 298267 5099116 ~ 5102383 (+) True G1584907
TU1814562 lncRNA downstream 329181 5130030 ~ 5132249 (+) True G1584900
XM_036953993.1 mRNA upstream 7967 4509175 ~ 4512950 (+) True LOC110512119
XM_036953808.1 mRNA upstream 67013 4451130 ~ 4453904 (+) True LOC110514540
XM_036955462.1 mRNA upstream 69840 4448502 ~ 4451077 (+) True LOC110515142
XM_036955461.1 mRNA upstream 78911 4435807 ~ 4442006 (+) True LOC118941534
XM_036953992.1 mRNA upstream 97232 4418701 ~ 4423685 (+) False LOC118941418
XM_036953809.1 mRNA downstream 9532 4810381 ~ 4813313 (+) True LOC118941353
XM_036954005.1 mRNA downstream 161847 4962696 ~ 5004867 (+) False LOC110533207
XR_005037639.1 mRNA downstream 161847 4962696 ~ 5004867 (+) True LOC110533207
XM_036954008.1 mRNA downstream 224091 5024940 ~ 5027850 (+) True LOC110497180
XM_021573144.2 mRNA downstream 227860 5028709 ~ 5032688 (+) True LOC110497170
TU1813928 other upstream 457691 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 829933 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 878041 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 898129 3617838 ~ 3622788 (+) False LOC110497294
TU1813330 other upstream 1035497 3483646 ~ 3485420 (+) True LOC110497289
TU1814555 other downstream 321142 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 321142 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 321142 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 629448 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 647627 5448476 ~ 5448938 (+) True G1585375

Expression Profile