RNA id: TU1814433


Basic Information

Item Value
RNA id TU1814433
length 239
lncRNA type read_through
GC content 0.45
exon number 3
gene id G1584797
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4704757 ~ 4796239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcagggtgttgtaactggtctgtctctgtagtcaggttgttgtaactggtctgtctctgtagtcagggtgttgtaactggtctgtctctttagtcagggtgttgtaactggtctgtctctttagtcagggtgttgtaactggtctgtctctttagtcagggtgttgtaactggtctgtctctttagtcaggttgttgtaactggtctgtctctttagtcaggttgttgtaactggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814381 lncRNA upstream 104947 4576367 ~ 4599810 (+) True LOC118941536
TU1814391 lncRNA upstream 112663 4591821 ~ 4592094 (+) True G1584760
TU1814344 lncRNA upstream 152630 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA upstream 217022 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 217141 4487164 ~ 4487616 (+) True G1584731
TU1814520 lncRNA downstream 124554 4920793 ~ 4921499 (+) True G1584869
TU1814567 lncRNA downstream 285780 5082019 ~ 5083416 (+) True LOC110498597
TU1814569 lncRNA downstream 292570 5088809 ~ 5090649 (+) True G1584906
TU1814570 lncRNA downstream 302877 5099116 ~ 5102383 (+) True G1584907
TU1814562 lncRNA downstream 333791 5130030 ~ 5132249 (+) True G1584900
XM_036955470.1 mRNA upstream 4383 4697782 ~ 4700374 (+) True LOC118941539
XM_036953997.1 mRNA upstream 36310 4663996 ~ 4668447 (+) False LOC118941421
XM_036953998.1 mRNA upstream 36310 4663996 ~ 4668447 (+) False LOC118941421
XR_005037635.1 mRNA upstream 36310 4663996 ~ 4668447 (+) True LOC118941421
XR_005037633.1 mRNA upstream 58992 4644045 ~ 4645765 (+) False LOC118941420
XM_036953809.1 mRNA downstream 14142 4810381 ~ 4813313 (+) True LOC118941353
XM_036954005.1 mRNA downstream 166457 4962696 ~ 5004867 (+) False LOC110533207
XR_005037639.1 mRNA downstream 166457 4962696 ~ 5004867 (+) True LOC110533207
XM_036954008.1 mRNA downstream 228701 5024940 ~ 5027850 (+) True LOC110497180
XM_021573144.2 mRNA downstream 232470 5028709 ~ 5032688 (+) True LOC110497170
TU1814367 other upstream 155568 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 641531 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1013773 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1061881 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1081969 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 325752 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 325752 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 325752 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 634058 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 652237 5448476 ~ 5448938 (+) True G1585375

Expression Profile