RNA id: TU1814464


Basic Information

Item Value
RNA id TU1814464
length 214
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1584826
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4794390 ~ 4794793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgaatggtaaataatgttgagtgagaaagttacagaggatcatacccccaagacatgctaacctctcaccattaccaataataggggaggttagcattttatatcatacccccaagacatgataacctctcaccattaccaataataggggaggttagcattttatatcatacccccaagacatgctaacctctcaccattaccaataatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814381 lncRNA upstream 194580 4576367 ~ 4599810 (+) True LOC118941536
TU1814391 lncRNA upstream 202296 4591821 ~ 4592094 (+) True G1584760
TU1814344 lncRNA upstream 242263 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA upstream 306655 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 306774 4487164 ~ 4487616 (+) True G1584731
TU1814520 lncRNA downstream 126000 4920793 ~ 4921499 (+) True G1584869
TU1814567 lncRNA downstream 287226 5082019 ~ 5083416 (+) True LOC110498597
TU1814569 lncRNA downstream 294016 5088809 ~ 5090649 (+) True G1584906
TU1814570 lncRNA downstream 304323 5099116 ~ 5102383 (+) True G1584907
TU1814562 lncRNA downstream 335237 5130030 ~ 5132249 (+) True G1584900
XM_036954003.1 mRNA upstream 153 4782485 ~ 4794237 (+) False LOC118941424
XR_005037638.1 mRNA upstream 153 4782485 ~ 4794237 (+) True LOC118941424
XM_036954002.1 mRNA upstream 23094 4763611 ~ 4771296 (+) True LOC118941423
XR_005037637.1 mRNA upstream 23976 4763611 ~ 4770414 (+) False LOC118941423
XM_036955470.1 mRNA upstream 94016 4697782 ~ 4700374 (+) True LOC118941539
XM_036953809.1 mRNA downstream 15588 4810381 ~ 4813313 (+) True LOC118941353
XM_036954005.1 mRNA downstream 167903 4962696 ~ 5004867 (+) False LOC110533207
XR_005037639.1 mRNA downstream 167903 4962696 ~ 5004867 (+) True LOC110533207
XM_036954008.1 mRNA downstream 230147 5024940 ~ 5027850 (+) True LOC110497180
XM_021573144.2 mRNA downstream 233916 5028709 ~ 5032688 (+) True LOC110497170
TU1814367 other upstream 245201 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 731164 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1103406 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1151514 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1171602 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 327198 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 327198 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 327198 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 635504 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 653683 5448476 ~ 5448938 (+) True G1585375

Expression Profile