RNA id: TU1814555


Basic Information

Item Value
RNA id TU1814555
length 1624
RNA type TUCP
GC content 0.43
exon number 3
gene id G1584899
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5121991 ~ 5128284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAACATGACCAGCGTGCCCGAGGTGGTCCTCGCCAAGGAGGCGGGCCTTTGCTATGCTAGCATCGCCATGGCCACCGACTACGACTGCTGGAAGGAGCATGAGGAGGCTGTCTGCGTCGACAACGTCCTGAAGACTATGAAGGAGAATGCCAACAAGGCCAGCAGTATCCTGCTCACTGCTATCCCCTTGATCTGCACCCAGGAGGACTGGACCCACACCATAAAGGCTCTGAAGACAACAGCCCAATCCTCAATAATGCTACCAAAACAACATTGAGAACCACCGAAAAGCCTCTCGCCACCCCTGTATATCAGAGAATGACTTGCAACACACCAGCCACCAATACCAACAATggattcatctctctctctctcgattcctCATCAGTGAATCACAAGAAAGTGCCTGATATGCATGTTTTCATTACTGTACATTTGCCAGGATTTCACAACACATTTGAGTAACATTACATCGTTTGCCAGAAGCATACCAttctgcatcccactgctggcttgcctctgaagctaagcagggttttTCCTGGATGTTCATGGATgtgagaccagatgctgctggaagtggtgttggagggtgaATAGGAGGCATTCTTTCTTCTGGTCCAAAAAAAAAGGTCCCAATGcctcagggcagtgattggggaaatttccctgtgtagggtgccgtctttaagataggtgtcctgactctgtggtcacCTAAAAGATCCCTGCTAAAATAAgggtaaacatttctctctctctctctctctctctctctctctctctctctctctctctctctctctatctctatctctctatatatatatatgagtcacTGTTTGTATACTGTTCAGCCATGTTTTCATACTGTagatacattttagaatgtaACTACGCATTAAAGTATGTCTTCTGAAAGAAAGGTTAAAGGACTTAGTTGGTTGTTTTCATGGATTGTTTGTAACCGCTATGGTCTGTACATGTCTATGACCAACAAGACTTTTGCACCGAGTATAATTGGAACAGGACATTCAATCAAAAGCAACTGCCACTTCCGTTGATAAAGCCTCAAGCCTGTTTATCCGGCTCTGGGGTGAAGTTTAGTTTAGGTAcatatctaggatcagcttccccaatCCTAACCATTTAGTGGGGGAAATGCTAAACTGGCTGAAGACCAGTGACTAGGACCAACTTCACCATACTGTTTTTCCACTTTGTTGCCCTGAAACAAGGTCAAACCACATTGTTGATAGATTCGTGGCTCTTTACTCCTAATTATTAGGTGAGGGAATAGTGGATTCATGGCTCATATACTTTCCATAAAATAAAAGGCCTTGTTTCATTAAGACTTCCACTGAGGGCATTATCGATCTGTCTCATATCATGTGACGGGATCATCTAAAACTATcttcaaaacacttcatgttaACCTAGCATTTATTTTTACATGGATTCACAGCTGCAGTATTATAACGTGCTAATAGGGTTCACTTCAGGAAGTAGGCTTAACAGTCAACATGATGGTGGATATTCAGTTATGATTGTGTTAGACTGCATGTACAGGTCAAATGTGTTTGCAAGTGTGACAAAATCAATAAAGTTATGTAGATTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814570 lncRNA upstream 19608 5099116 ~ 5102383 (+) True G1584907
TU1814569 lncRNA upstream 31342 5088809 ~ 5090649 (+) True G1584906
TU1814567 lncRNA upstream 38575 5082019 ~ 5083416 (+) True LOC110498597
TU1814520 lncRNA upstream 200492 4920793 ~ 4921499 (+) True G1584869
TU1814316 lncRNA upstream 321142 4520917 ~ 4800849 (+) True G1584698
TU1814562 lncRNA downstream 1746 5130030 ~ 5132249 (+) True G1584900
TU1814595 lncRNA downstream 23237 5151521 ~ 5151833 (+) True G1584932
TU1814597 lncRNA downstream 28898 5157182 ~ 5158472 (+) True G1584934
TU1814599 lncRNA downstream 30303 5158587 ~ 5159609 (+) True G1584935
TU1814600 lncRNA downstream 32319 5160603 ~ 5160972 (+) True G1584936
NM_001160570.1 mRNA upstream 6796 5109541 ~ 5115195 (+) True LOC100301741
XM_021573149.2 mRNA upstream 26332 5093588 ~ 5095659 (+) False LOC110497175
XM_036954016.1 mRNA upstream 26332 5093588 ~ 5095659 (+) True LOC110497175
XM_036954009.1 mRNA upstream 37165 5069016 ~ 5084826 (+) False LOC110498597
XM_036954010.1 mRNA upstream 37165 5069016 ~ 5084826 (+) False LOC110498597
XM_036954021.1 mRNA downstream 205096 5333380 ~ 5390400 (+) True tet2
trnaa-ugc-141 mRNA downstream 266340 5394624 ~ 5394699 (+) True trnaa-ugc-141
XM_036954026.1 mRNA downstream 277182 5405466 ~ 5424393 (+) False LOC118941427
XM_036954025.1 mRNA downstream 277359 5405643 ~ 5424393 (+) False LOC118941427
XM_036954024.1 mRNA downstream 278154 5406438 ~ 5424393 (+) True LOC118941427
TU1814367 other upstream 572802 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 1058765 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1431007 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1479115 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1499203 3617838 ~ 3622788 (+) False LOC110497294
TU1815161 other downstream 302013 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 320192 5448476 ~ 5448938 (+) True G1585375
TU1815155 other downstream 360804 5489088 ~ 5491147 (+) True LOC110497310
TU1815286 other downstream 515472 5643756 ~ 5715375 (+) True G1585483
TU1815626 other downstream 680694 5808978 ~ 5812853 (+) True G1585804

Expression Profile