RNA id: TU1815332



Basic Information


Item Value
RNA id TU1815332
length 202
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1585529
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5743321 ~ 5743542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATTAGGTTCTGCGGGTGTATTTTATTCACTTAACTGTCCAGTCATTGAATCGGTGGGAGACACTCAATGCTTTAAGACCTCTGAGCGTATATAACCACGCAGAGTTGGACTAAAACCAGCCATTCAGTTTTCCTGTGTCTTATcctattgtACACTTTTAAAGTGTTCgttttcatcagctgttgtacaataggATAAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1815317 lncRNA upstream 24511 5715871 ~ 5718810 (+) True G1585514
TU1815284 lncRNA upstream 33247 5635409 ~ 5710074 (+) True G1585481
TU1815278 lncRNA upstream 90441 5626657 ~ 5652880 (+) True G1585475
TU1815248 lncRNA upstream 165440 5577430 ~ 5577881 (+) True G1585445
TU1815245 lncRNA upstream 167527 5575093 ~ 5575794 (+) True G1585442
TU1815365 lncRNA downstream 61217 5804759 ~ 5805822 (+) True G1585560
TU1815663 lncRNA downstream 103256 5846798 ~ 5849295 (+) True G1585839
TU1815672 lncRNA downstream 124345 5867887 ~ 5868101 (+) True G1585848
TU1815707 lncRNA downstream 164141 5907683 ~ 5909339 (+) False G1585882
TU1815708 lncRNA downstream 164141 5907683 ~ 5909339 (+) True G1585882
XM_036954038.1 mRNA upstream 183097 5499161 ~ 5560224 (+) False npnta
XM_036954053.1 mRNA downstream 40428 5783970 ~ 5807227 (+) False aimp1a
XM_021573370.2 mRNA downstream 40803 5784345 ~ 5807227 (+) True aimp1a
XM_036954079.1 mRNA downstream 200083 5943625 ~ 5966079 (+) False LOC118941430
XM_036954078.1 mRNA downstream 200088 5943630 ~ 5966075 (+) True LOC118941430
XM_036954061.1 mRNA downstream 222656 5966198 ~ 5970708 (+) False LOC110497324
TU1815286 other upstream 27946 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 252174 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 273098 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other upstream 294383 5448476 ~ 5448938 (+) True G1585375
TU1814559 other upstream 615037 5121991 ~ 5128284 (+) True G1584899
TU1815626 other downstream 65436 5808978 ~ 5812853 (+) True G1585804
TU1815818 other downstream 426542 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 618306 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1311303 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2996002 8739544 ~ 8844780 (+) True G1587727

Expression Profile