RNA id: TU1815365


Basic Information

Item Value
RNA id TU1815365
length 287
lncRNA type intronic
GC content 0.52
exon number 2
gene id G1585560
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5804759 ~ 5805822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAAAACAAAacgttttGGGAGGGAGTTGAGTCGTGCAGTTGTTGGTAGGGAACAGTACCTGAACTGGGAGTTTCCATCAGGACTGGAGCCCGCTGACATCAGCCTGGGttctcctttcatctcctctcaCGGCCCCTCCTAAAGCTGTTTGTTTAACGAGCGATCccactagggctgtggcggtcattcaATTCCCAGCGGCCAAAAAAACGTGTTTTTTACGACCCTACGCACACAGAGAACGAACACGaaatggaagagaggagagaaggaaggaggaagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1815332 lncRNA upstream 61217 5743321 ~ 5743542 (+) True G1585529
TU1815317 lncRNA upstream 85949 5715871 ~ 5718810 (+) True G1585514
TU1815284 lncRNA upstream 94685 5635409 ~ 5710074 (+) True G1585481
TU1815278 lncRNA upstream 151879 5626657 ~ 5652880 (+) True G1585475
TU1815248 lncRNA upstream 226878 5577430 ~ 5577881 (+) True G1585445
TU1815663 lncRNA downstream 40976 5846798 ~ 5849295 (+) True G1585839
TU1815672 lncRNA downstream 62065 5867887 ~ 5868101 (+) True G1585848
TU1815707 lncRNA downstream 101861 5907683 ~ 5909339 (+) False G1585882
TU1815708 lncRNA downstream 101861 5907683 ~ 5909339 (+) True G1585882
TU1815717 lncRNA downstream 124052 5929874 ~ 5934273 (+) False G1585891
XM_036954038.1 mRNA upstream 244535 5499161 ~ 5560224 (+) False npnta
XM_036954079.1 mRNA downstream 137803 5943625 ~ 5966079 (+) False LOC118941430
XM_036954078.1 mRNA downstream 137808 5943630 ~ 5966075 (+) True LOC118941430
XM_036954061.1 mRNA downstream 160376 5966198 ~ 5970708 (+) False LOC110497324
XM_036954060.1 mRNA downstream 160377 5966199 ~ 5971268 (+) False LOC110497324
XM_036954059.1 mRNA downstream 160379 5966201 ~ 5971239 (+) False LOC110497324
TU1815286 other upstream 89384 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 313612 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 334536 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other upstream 355821 5448476 ~ 5448938 (+) True G1585375
TU1814559 other upstream 676475 5121991 ~ 5128284 (+) True G1584899
TU1815626 other downstream 3156 5808978 ~ 5812853 (+) True G1585804
TU1815818 other downstream 364262 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 556026 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1249023 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2933722 8739544 ~ 8844780 (+) True G1587727

Expression Profile