RNA id: TU1815663


Basic Information

Item Value
RNA id TU1815663
length 2397
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1585839
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5846798 ~ 5849295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTCTTTATTTATTCATCCATCACTGTAAATGCACAGAAAATATCTGCTGAAAACAGTAGGACAGTGACATTTGCCTCAATGCGGTCGTATTCGTGGCTTATTGGGTGTGTGGCTTTCAGTTACTTATTTTTGGCCACCCCATCCCATGAAAGTGAATGTCATTCCAGTTCATATGAACGTCATTCCAGTGCACTGCTTGCTATGAAGTCTATCTGATTGTGTTTGCATCTTTAGGTAAAAATACCAATAATGTCCCGTTTGGAACACTGACAAGTAGAGAGCCTATAAACACCGCACAATCTGATTGGGCCCAAGCCCACCCAGGACCACCAGTGCCTACGCGGCAGGCTTGAACTAACCTTGCTGCAATGTCCCCTTTTAATCATCTCACCTCGTCCTTTTTGTTGTTACCTTAATATCTTTCTAATGTTTATTATTATCTGTACATGATATACATTGATTCTTAAATACAATTTCAATTGTTTCCACATTATATACAATATAAGAGCTTATTGACGTTAGAAAACTGGTGGAAATGGTGCCTGGAAAACaaatggaaaacaaaatggaggtCCATATTATTGCATTGACTATGTACTGTAGGGAACAACTGGTTAAGTTTAACATTGAAAATCATCTAATGTGAAAAACAATGAGCAGGTCGGTACACTGTACATCCAGTAAGACGTGTGAAAAGTTCAATTGAATACAGATCGCAAATGTGGGGGGAAAGACCAAAAGGTTATTGGGCATATTTGCAATTGCAGTAATATTTTCAGAATTTATAAGTAGTAGTAACAGATAAAACCACGTGTTCAATATGTCCTGATTGAATTCCTGGATTCCTGGTTGTGGTCTCAGCTCCAGTCATATGGATGTCATTTGGGGACGAGAGGCACTTTGGGGTCTGGTATCAGTTCTACACCACTGACCCTCCAGTCCTGTGGTTGAACCAATCAAACTGAATCTCTTTGGATTCTAGCCTGCAATCAAACTGAATATGTTTGGATTCTAGCCTGGATTCTATCAAAATCTAGAAAACTAAACATGTTTGGATTCCAGGCTCTTAATAGCCTTACTATGGCATACGTCTACACTTAGACTCAACTGAGACAAATCCAGGCTAGTTCTCAACCCAAATGAACACGAATGCGAGATTCCGGAGTggtgcctgagacagcattttccaccaccatcaacaaaacaccaaatgatggaatttcttgtggaagaatgaagtcacatccctccaatagagttccagacacttgtcaAATCTATGCCGAGGTgcactgaagctgttctggctcaacGACCTATTgaaacactttatgttggtgtttcctttattttggcagtaacCTGTATATCTATGTTCATAATCTATGCAAAACATATATGCTTTCTGTTCTTTACTAGCATGGTTGAGCCCACATGTTGGTTTGAGAGTCATTGTTACTGTAGGCGACTATTCGTTTGGAGATTCCCACATTGGTTACGCTATTGGAGTGAACGCTCCAAATATAATCAGAATAGTGAGATTACAATAGTGCTTGTATCGGTTAGCTGGGGTTCTGTCATTCCCTTAGTGTGAAAATATCATACGTGAAATATGTGCCAAAAACAAACATAACTAGTAAACCAAGGGTGCATCACAGCAGTCTTGCCTTCATAAGGATAGATAGGAAGATGTTTCTATGCCATTGGTTAATGATGGCTGTAATAAAGATATGTCTTTTCTTTTCATGATGTGAAAATATATGCAACATTTTAAGGAACTTGTACATAAAACACATCCAACTTTGTGAAGAGCCTTCGACATAAAGAAGTTAGTTTGCATAAAGTCCTCGAGAACCCGCTGAACAACTTAAGGATGAATGCAACAGTCTCAGAACTCTGCGAGAATGTTCTGAGCTGGAACACAACCAAACAGGAAGGATCATACATGGAACGGTGCCAAATGCTCTCAGAAAAACCTCCTTCTTTGCTTGAGTTTGCTGGGTATCAACCAGCCCTCAGcatcttccattctctctctcaatctctctttcccagtctctCATCTCATGTCATCTCCTGGTTCTCCTCCTCCGAAAGCAGGTcggaggaagacaaagagaaaGGCCTCGGCGGACAGCCCTGCCTCACCCTTCAGATCCTCTGGCACATGTGAAGCCTGgacttggaggaggaggtggcgtCCTTCCAGACCTTGCAGGAGAGACCCTTGGCACAGTCGCAGCGCTGGAATATCTCCAGGCCGTGGGAGCCCTTCTTCCTCTGCTTGGTGCACACCTCGCCCTGCCGCAGCACCGGTTTGCAGATCTTGGTCCAGAAGTGGCGAGCGCAGCAGTAGCCCACGGAGCAGTCCGACGAGCGCAGGCACGGGTCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1815365 lncRNA upstream 40976 5804759 ~ 5805822 (+) True G1585560
TU1815332 lncRNA upstream 103256 5743321 ~ 5743542 (+) True G1585529
TU1815317 lncRNA upstream 127988 5715871 ~ 5718810 (+) True G1585514
TU1815284 lncRNA upstream 136724 5635409 ~ 5710074 (+) True G1585481
TU1815278 lncRNA upstream 193918 5626657 ~ 5652880 (+) True G1585475
TU1815672 lncRNA downstream 18592 5867887 ~ 5868101 (+) True G1585848
TU1815707 lncRNA downstream 58388 5907683 ~ 5909339 (+) False G1585882
TU1815708 lncRNA downstream 58388 5907683 ~ 5909339 (+) True G1585882
TU1815717 lncRNA downstream 80579 5929874 ~ 5934273 (+) False G1585891
TU1815719 lncRNA downstream 84708 5934003 ~ 5941071 (+) True G1585891
XM_036954053.1 mRNA upstream 39571 5783970 ~ 5807227 (+) False aimp1a
XM_021573370.2 mRNA upstream 39571 5784345 ~ 5807227 (+) True aimp1a
XM_036954038.1 mRNA upstream 286574 5499161 ~ 5560224 (+) False npnta
XM_036954079.1 mRNA downstream 94330 5943625 ~ 5966079 (+) False LOC118941430
XM_036954078.1 mRNA downstream 94335 5943630 ~ 5966075 (+) True LOC118941430
XM_036954061.1 mRNA downstream 116903 5966198 ~ 5970708 (+) False LOC110497324
XM_036954060.1 mRNA downstream 116904 5966199 ~ 5971268 (+) False LOC110497324
XM_036954059.1 mRNA downstream 116906 5966201 ~ 5971239 (+) False LOC110497324
TU1815626 other upstream 33945 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 131423 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 355651 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 376575 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other upstream 397860 5448476 ~ 5448938 (+) True G1585375
TU1815818 other downstream 320789 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 512553 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1205550 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2890249 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 3051691 8900986 ~ 8947363 (+) True G1587790

Expression Profile