RNA id: TU1815818



Basic Information


Item Value
RNA id TU1815818
length 744
RNA type TUCP
GC content 0.41
exon number 1
gene id G1585983
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6169580 ~ 6170827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAATGATTAATCGAGCAATGAAGAAAAACCTTGTTTTTCTACTTAAATAACTCCATAAATTTTCAAACATTCAAAATGAAAAATATACAATTGATGAAGATTATGGTTCCAACTTCACATTTTTTCCCAGGCCAAAAAAAGTTCAAGTGAGACAGTGGTCATTTCTTCATCTGCGGAATGAACTTCAAGGTCCATGTAACTCCACACAAGGTTCCACTGTGGGTTCCACTGTGGTAGCTAGGAAGCATTCTCTGGGTTCCTCACAATACTAGCACTGCTAATGTATGGACTGGAAGGAGGGCAGCATCTCCAGATGAGCCTAAAAATCTTGTTTAAGTCAAGCAGGTGAAGTAGTTATCTAGAGTGAAGAAGATTGTGATTTGCTTGTTACAGCAGAATGCTTGGCGCTTCAATACTCGAGGCACCAGCACAATGCCTTCTGCTTTTCCAGTCAGTGTTCATTTCCAGAGTGGGTTCTTATTTCCAGAAAACACAAAAAGACAAGCAAAGATAGAAGAGAAAGAAGTTGTGGTTCTCAAGTGTTTTGGGAGGTTGGTCTATTCTTCAGTTGGTTCATTGAGATGCAGCAAGGCAGTTCCCAGGAAGGAGGGGGTGGTGAGGAGGATGGAAAGATGGGTActgggggagggatggggacaACTTATAACGTCAACGGTAAggctaattatttttattttcctcCTTTCAATCTCCATGGTTTTTccttaaaaaaacacatttac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1815817 lncRNA upstream 996 6168507 ~ 6169088 (+) True G1585982
TU1815811 lncRNA upstream 3417 6166209 ~ 6166667 (+) True G1585976
TU1815808 lncRNA upstream 3447 6164513 ~ 6166637 (+) False G1585976
TU1815810 lncRNA upstream 3447 6166154 ~ 6166637 (+) False G1585976
TU1815809 lncRNA upstream 3447 6166209 ~ 6166637 (+) False G1585976
TU1815834 lncRNA downstream 12289 6183116 ~ 6183407 (+) True G1585989
TU1815836 lncRNA downstream 15463 6186290 ~ 6186990 (+) False G1585991
TU1815838 lncRNA downstream 15463 6186290 ~ 6186939 (+) False G1585991
TU1815837 lncRNA downstream 15504 6186331 ~ 6186939 (+) False G1585991
TU1815839 lncRNA downstream 15504 6186331 ~ 6186990 (+) True G1585991
XM_036954081.1 mRNA upstream 18139 6122953 ~ 6151945 (+) False LOC110497334
XM_036954082.1 mRNA upstream 18139 6122954 ~ 6151945 (+) True LOC110497334
XM_021573383.2 mRNA upstream 194320 5972346 ~ 5975764 (+) True LOC110497328
XM_036954057.1 mRNA upstream 196605 5966204 ~ 5973479 (+) False LOC110497324
XM_036954058.1 mRNA upstream 196605 5966204 ~ 5973479 (+) True LOC110497324
XM_036954094.1 mRNA downstream 35466 6206293 ~ 6222302 (+) False LOC110497332
XR_005037642.1 mRNA downstream 115354 6286181 ~ 6288416 (+) True LOC118941431
XR_005037643.1 mRNA downstream 121242 6292069 ~ 6294461 (+) True LOC118941432
XM_036954105.1 mRNA downstream 1389583 7560410 ~ 7575349 (+) False sclt1
XM_036954106.1 mRNA downstream 1389634 7560461 ~ 7575349 (+) True sclt1
TU1815626 other upstream 357231 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 454709 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 678937 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 699861 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other upstream 721146 5448476 ~ 5448938 (+) True G1585375
TU1816080 other downstream 191021 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 884018 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2568717 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 2730159 8900986 ~ 8947363 (+) True G1587790
TU1818058 other downstream 2822627 8993454 ~ 9063965 (+) True G1587805

Expression Profile