RNA id: TU1816080


Basic Information

Item Value
RNA id TU1816080
length 297
RNA type TUCP
GC content 0.55
exon number 2
gene id G1586200
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6361848 ~ 6362312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTACCATGCAGCCCCAGTCCAGGAGAGATGACTGTGTTAGAGACAGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGAGACAGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGAGACAGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGAGACAGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGGGACAGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGAGACTGGGACCTGGACTGAACCAGGAGAGGTGACTGTGTTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1816072 lncRNA upstream 24661 6336872 ~ 6337187 (+) True G1586192
TU1816061 lncRNA upstream 45295 6316235 ~ 6316553 (+) True G1586181
TU1815869 lncRNA upstream 110486 6251127 ~ 6251362 (+) True G1586019
TU1815856 lncRNA upstream 140493 6220956 ~ 6221355 (+) True LOC110497332
TU1815861 lncRNA upstream 143018 6218507 ~ 6218830 (+) True G1586011
TU1816117 lncRNA downstream 89500 6451812 ~ 6452628 (+) True G1586221
TU1816151 lncRNA downstream 202249 6564561 ~ 6564984 (+) True G1586255
TU1816278 lncRNA downstream 248014 6610326 ~ 6610757 (+) True G1586372
TU1816280 lncRNA downstream 251461 6613773 ~ 6614049 (+) True G1586374
TU1816281 lncRNA downstream 254930 6617242 ~ 6617601 (+) True G1586375
XR_005037643.1 mRNA upstream 67387 6292069 ~ 6294461 (+) True LOC118941432
XR_005037642.1 mRNA upstream 73432 6286181 ~ 6288416 (+) True LOC118941431
XM_036954094.1 mRNA upstream 139546 6206293 ~ 6222302 (+) False LOC110497332
XM_036954081.1 mRNA upstream 209903 6122953 ~ 6151945 (+) False LOC110497334
XM_036954082.1 mRNA upstream 209903 6122954 ~ 6151945 (+) True LOC110497334
XM_036954105.1 mRNA downstream 1198098 7560410 ~ 7575349 (+) False sclt1
XM_036954106.1 mRNA downstream 1198149 7560461 ~ 7575349 (+) True sclt1
XM_036955471.1 mRNA downstream 1213170 7575482 ~ 7766837 (+) True LOC110516931
XM_036955472.1 mRNA downstream 1675482 8037794 ~ 8043805 (+) True LOC118941540
XM_036954119.1 mRNA downstream 1695986 8058298 ~ 8065704 (+) True LOC110534596
TU1815818 other upstream 191021 6170084 ~ 6170827 (+) True G1585983
TU1815626 other upstream 548995 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 646473 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 870701 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 891625 5430297 ~ 5470223 (+) False LOC110497310
TU1816647 other downstream 692533 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2377232 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 2538674 8900986 ~ 8947363 (+) True G1587790
TU1818058 other downstream 2631142 8993454 ~ 9063965 (+) True G1587805
TU1818567 other downstream 2980547 9342859 ~ 9413146 (+) False G1588177

Expression Profile