RNA id: TU1816647


Basic Information

Item Value
RNA id TU1816647
length 1583
RNA type TUCP
GC content 0.45
exon number 2
gene id G1586672
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 7054845 ~ 7056469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCACCCTCTCCAGACCAGTCTGATGTACCATATAGAAACAGGACAGAATGTTGCAATAGGCCTGTGCAACCCAAGGTTTTACAACAGCAGAAACATAAACCCTCTTAAACCTAAACCAAACCCCTCAGCTTAACATAGTCTTGGTCCTCATGGGgatgtgggaaatgtccccaTGAGGGAGAATCTTCCCCGCAAGGTTAGAAGAACcaacccatcacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacagacacagacacacacaacacacacacacacacacacacacacaacacacacttacacacacacacacacacacacacaaaaacaaacactcacacagaggGAAACAAACAAAGGGGCAGTGGGTAGATTAGTTCAGCACGAAGCAGAACTTCATCATGATTATTACCTGAGGGAGAATGAGCCAGCatgcagtaacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatacagacacacacacacacacacacacacacacacacacacacacacacacagatacagacacacacacacacacacacacacacacagacacacaaacacacacacacacacacactcacacacacacacacacacacacccacacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagatacagacacagacacaggcacacacagacacacacacacacacacacacacacacacacacacacacgtagatccagacagacacacacacacacacagcatgcccTAAAATGTAGAATCACAATTAACAGCAGCGTGTTAATTTAGCAGTGGAGCAGCTCGTTATGTAACTAAGTGTTAAAACACAGTTAAAAACAACCGCCTTCACTCCCTGCCAGTTTAATGATGTCCTGGCGTTGTTGCTCTTTATGTTTCCATAGAAACACGTGGCACATGGTAGCCTACACCTTACATAGTGTATTTCTTTTAGCAAggtcccacagggctctggtcaaaagcagtacactacatagggaatagggtgcaatttcagACGCAGACCATAGTGAGAAGAGACTACTAGGTGGAAGGACAATCAGTAGTTGTGCAGGAAGGTGTTTTTAGATAACGAATGCCGTTATTTACCGATGAGTCGTAGGCTACGTCCCCGTTCCCTACTTTTCACCAGGACCCAGACGCATGTATAGTATGACATCATAATATTACTACTGAGCTCAGTACATGTATAGTATGACATCATAATATCACTACTGAGCTCAGTACATGTTTAGTATGACATCATAATATCACTACTGAGCTCAGTACATGTATAGTATGACATCATAATATCACTCACTACTGAGCTCAGTACATGCATAGTATGACATCATAATATCACTACTGAGCTCAGTACATGTATAGTATGACATCATAATATCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1816631 lncRNA upstream 20213 7033090 ~ 7034632 (+) False G1586660
TU1816630 lncRNA upstream 20213 7034136 ~ 7034632 (+) True G1586660
TU1816625 lncRNA upstream 23886 7030657 ~ 7030959 (+) True G1586657
TU1816624 lncRNA upstream 27450 7026680 ~ 7027395 (+) True G1586656
TU1816621 lncRNA upstream 34418 7020083 ~ 7020427 (+) True G1586653
TU1816653 lncRNA downstream 5154 7061623 ~ 7062427 (+) True G1586676
TU1816675 lncRNA downstream 30756 7087225 ~ 7087457 (+) True G1586692
TU1816692 lncRNA downstream 48184 7104653 ~ 7105011 (+) True G1586705
TU1816693 lncRNA downstream 49803 7106272 ~ 7106532 (+) True G1586706
TU1816682 lncRNA downstream 55944 7112413 ~ 7116899 (+) True G1586699
XR_005037643.1 mRNA upstream 760384 6292069 ~ 6294461 (+) True LOC118941432
XR_005037642.1 mRNA upstream 766429 6286181 ~ 6288416 (+) True LOC118941431
XM_036954094.1 mRNA upstream 832543 6206293 ~ 6222302 (+) False LOC110497332
XM_036954081.1 mRNA upstream 902900 6122953 ~ 6151945 (+) False LOC110497334
XM_036954105.1 mRNA downstream 503941 7560410 ~ 7575349 (+) False sclt1
XM_036954106.1 mRNA downstream 503992 7560461 ~ 7575349 (+) True sclt1
XM_036955471.1 mRNA downstream 519013 7575482 ~ 7766837 (+) True LOC110516931
XM_036955472.1 mRNA downstream 981325 8037794 ~ 8043805 (+) True LOC118941540
XM_036954119.1 mRNA downstream 1001829 8058298 ~ 8065704 (+) True LOC110534596
TU1816080 other upstream 692533 6361848 ~ 6362312 (+) True G1586200
TU1815818 other upstream 884018 6170084 ~ 6170827 (+) True G1585983
TU1815626 other upstream 1241992 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 1339470 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 1563698 5489088 ~ 5491147 (+) True LOC110497310
TU1817945 other downstream 1683075 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 1844517 8900986 ~ 8947363 (+) True G1587790
TU1818058 other downstream 1936985 8993454 ~ 9063965 (+) True G1587805
TU1818567 other downstream 2286390 9342859 ~ 9413146 (+) False G1588177
TU1818569 other downstream 2286390 9342859 ~ 9409298 (+) True G1588177

Expression Profile