RNA id: TU1817548


Basic Information

Item Value
RNA id TU1817548
length 1237
lncRNA type read_through
GC content 0.45
exon number 5
gene id G1587395
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8091427 ~ 8210499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTACTCTGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGAAAAGTCGACTGGTGTCAACAACCCTCACCACAGTACTTCCTGCTCCAGACCAGCTGACTGTTGACTCAGTGGACACCACATCAGCTGCTGTTAGCTGGAGTCAGCCACCAGGATTGAACCAAACCCAACATCATTATCATTACCAAATCTCCTACCAGTGTCCAGGGACAAAACCACACATCACTACCACATCTTCACACAGCATCAGTCTCTCTGACCTGCAATGTGGTACTCAGTACTCCGTCACTGTCTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTCAACAACCCTAACCACAGAACATGTTCAGTGGTGGAAGAGGCCCTCCAGAGTTGCTGCAGTGTTTGTTCTACTGGCTGTGATCATTGGCCTGTGGGATTCCTATGCAACTTCAGAGCgagaccagctacagaatagTCTAAATACcaggaccacagagagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactatagagagagaccagctacagagtAGTCTAAATACCAGAACCACTGAAATAGACAAGTTGAAGAAGAGTCTGAACACTACAACTATGGAGCGTGACCAGCTACAGAAGGAGATAGAAAGACTGAACTGGGAGAACAAAGGTAAATGTGTACAAAGGGCCCACCTTTTTATTTGCTTCCTGATCCACAGTTTCTGTAGTTGACCTGTTATCTCACACAAGCATATTAAAGAAGTATTGTCAATGCTATCCATGACCATTAGGACCAGAAACAAATTAAATTGACTGGAGCTGTGTTGTGCCTTTTCGCTCAACACACGCCACGGGAGATCAGAGGTCATCAGAACTACCTAGAACTCagattgtattatttttttaggGGGTAGGTCATTTTTAATGTTGCAGATTGTGGCTTCCTTCAATGTGGAGCGGCAGggtaggggcagcagggtagcctagtggttagattgttggactagtaaccgaaaggttggaagatcgaatccccgagctgacaaggtagatttctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataattatatataaaaacatgtaaTTGTCTGcaccatttccaatccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1817472 lncRNA upstream 58421 8031487 ~ 8033006 (+) True G1587336
TU1817422 lncRNA upstream 66029 7939949 ~ 8025398 (+) True G1587291
TU1817429 lncRNA upstream 78128 7951984 ~ 8013299 (+) True G1587297
TU1817452 lncRNA upstream 95311 7995830 ~ 7996116 (+) True G1587317
TU1817449 lncRNA upstream 102523 7988027 ~ 7988904 (+) True G1587314
TU1817590 lncRNA downstream 8044 8218543 ~ 8219545 (+) False G1587433
TU1817589 lncRNA downstream 8101 8218600 ~ 8219545 (+) True G1587433
TU1817591 lncRNA downstream 9049 8219548 ~ 8221232 (+) True G1587434
TU1817596 lncRNA downstream 34514 8245013 ~ 8245475 (+) True G1587439
TU1817597 lncRNA downstream 39979 8250478 ~ 8255121 (+) True G1587440
XM_036954119.1 mRNA upstream 25723 8058298 ~ 8065704 (+) True LOC110534596
XM_036955472.1 mRNA upstream 47622 8037794 ~ 8043805 (+) True LOC118941540
XM_036955471.1 mRNA upstream 324590 7575482 ~ 7766837 (+) True LOC110516931
XM_036954105.1 mRNA upstream 516078 7560410 ~ 7575349 (+) False sclt1
XM_036954106.1 mRNA upstream 516078 7560461 ~ 7575349 (+) True sclt1
XR_002472028.2 mRNA downstream 156921 8367420 ~ 8368960 (+) True LOC110513700
XM_036954133.1 mRNA downstream 288788 8499287 ~ 8506656 (+) True LOC118941437
XM_036954150.1 mRNA downstream 397665 8608164 ~ 8609344 (+) True LOC110534718
XR_005037645.1 mRNA downstream 401427 8611926 ~ 8626318 (+) False LOC110498609
XM_036954148.1 mRNA downstream 401429 8611928 ~ 8626846 (+) True LOC110498609
TU1816647 other upstream 1034958 7054845 ~ 7056469 (+) True G1586672
TU1816080 other upstream 1729115 6361848 ~ 6362312 (+) True G1586200
TU1815818 other upstream 1920600 6170084 ~ 6170827 (+) True G1585983
TU1815626 other upstream 2278574 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 2376052 5643756 ~ 5715375 (+) True G1585483
TU1817945 other downstream 529045 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 690487 8900986 ~ 8947363 (+) True G1587790
TU1818058 other downstream 782955 8993454 ~ 9063965 (+) True G1587805
TU1818567 other downstream 1132360 9342859 ~ 9413146 (+) False G1588177
TU1818569 other downstream 1132360 9342859 ~ 9409298 (+) True G1588177

Expression Profile