RNA id: TU1817945



Basic Information


Item Value
RNA id TU1817945
length 615
RNA type TUCP
GC content 0.46
exon number 3
gene id G1587727
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8739544 ~ 8844780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAATATTCTCCGGAGAGAAAAGACGACATTAAAGATTTGGATAAGCAATTATCTGACTGTTCCTTGGGTCTTGAACACTTCCTGCGTGAGTTGGGCCAGTTATATGAAGCTGCCTGCTCCCTCCCTGAAGACAGTCCTCAAAGGAAACAGATGGAGCATCTCCCTGGATTGTGTGCTCAGATGCTGTTGGATGGTTTCCCCATTGAGCTTGTGGATGGAGATGCATCAAATATCCCTCTGAAATGGATATCAGCTGTTCTGACTCAGCTTCATACTCTTGTCCAATCCAACAGCAAGATCCGGGTTGTGACAGTTTTGGGGGTTCAAAGTACAGGGAAGTCCACTCTCCTCAACACCATGTTTGGTGTCCAGTTTGCTGTCAGCAGTGGAAGATGCACCAGAGGGGCCTTCATGCTTCTGATTAAAGTCAGCAAAGACTTCAAGGAGGAGCTGAAATGTGACTTCATCATGGTGATCGACACAGAGGGattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1817959 lncRNA upstream 4251 8734841 ~ 8735293 (+) True G1587741
TU1817956 lncRNA upstream 14308 8724863 ~ 8725236 (+) True G1587738
TU1817943 lncRNA upstream 16461 8715297 ~ 8723083 (+) True LOC118941438
TU1817946 lncRNA upstream 68302 8670958 ~ 8671242 (+) True LOC110497213
TU1817938 lncRNA upstream 73185 8665669 ~ 8666359 (+) True G1587720
TU1818050 lncRNA downstream 77480 8922260 ~ 8937642 (+) True G1587799
TU1818078 lncRNA downstream 112322 8957102 ~ 8957976 (+) False G1587824
TU1818079 lncRNA downstream 112322 8957102 ~ 8957976 (+) False G1587824
TU1818080 lncRNA downstream 112322 8957102 ~ 8957976 (+) False G1587824
TU1818081 lncRNA downstream 112322 8957102 ~ 8957976 (+) True G1587824
XM_036955476.1 mRNA upstream 31857 8670919 ~ 8707687 (+) False LOC110497213
XR_005037647.1 mRNA upstream 95923 8640309 ~ 8643621 (+) False LOC118941439
XR_005037648.1 mRNA upstream 95923 8640309 ~ 8643621 (+) False LOC118941439
XR_005037649.1 mRNA upstream 95923 8640309 ~ 8643621 (+) False LOC118941439
XM_036954149.1 mRNA upstream 99320 8631180 ~ 8640224 (+) True LOC110497214
XM_036954154.1 mRNA downstream 30329 8875109 ~ 8904658 (+) False vwa11
XM_036954155.1 mRNA downstream 30329 8875109 ~ 8904658 (+) True vwa11
XM_036954153.1 mRNA downstream 64680 8909460 ~ 8953635 (+) False LOC110518381
XM_036954152.1 mRNA downstream 88186 8932966 ~ 8953635 (+) True LOC110518381
XM_036954163.1 mRNA downstream 115819 8960599 ~ 8981315 (+) False LOC110497233
TU1816647 other upstream 1683075 7054845 ~ 7056469 (+) True G1586672
TU1816080 other upstream 2377232 6361848 ~ 6362312 (+) True G1586200
TU1815818 other upstream 2568717 6170084 ~ 6170827 (+) True G1585983
TU1815626 other upstream 2926691 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 3024169 5643756 ~ 5715375 (+) True G1585483
TU1818036 other downstream 56206 8900986 ~ 8947363 (+) True G1587790
TU1818058 other downstream 148674 8993454 ~ 9063965 (+) True G1587805
TU1818567 other downstream 498079 9342859 ~ 9413146 (+) False G1588177
TU1818569 other downstream 498079 9342859 ~ 9409298 (+) True G1588177
TU1818606 other downstream 578985 9423765 ~ 9424536 (+) True LOC110514468

Expression Profile