RNA id: TU1826096



Basic Information


Item Value
RNA id TU1826096
length 1772
RNA type TUCP
GC content 0.46
exon number 1
gene id G1594737
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 16434453 ~ 16436367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCATTACAAATAACATGTATTGCACAAAACGATACATGACAAGTAGAAAAACTTACTTTTCTGTAAATCTAGTACCTTCGCTTTGATGCAACTATAGAATACTTTGGAAATGGTTCAATATTACACACAGCTTCAATACTTCATGAATTAAGGCACTATCATTATCTCACTATAAAACACCTAAAAACAAAGTTTGTCACTTCATTAGTGAAGCATTTTTACACCATCCATCACCCTATCATCTACTCGGTCTCATCATACTCATTCTTTCCTCAGTTCACCTCATAGTTCCCGATACATCCATTACCAACAGAATTAACTACAAACTAACTAGTATTACATGACATGTCACTCTATACATGGGCCGTGTgcattttctgctggtgtatcctgaggtagctcctctctgagaacctcttcccaCAGTGTGTACAGGCAAACGGCCGCTCTCCTGTAtggaccttcaggtgcatcttcagctggtgctggcgggagaacctcttctcacactgggggcagctgtagggtttctcccctgtgtggactctctggtgcctcttcaggttggATGATTGAGAGAAACTGGCCCGGCACAGCTGGCAGCCAAATGGTTTCTCCCCCGTGTGcatcctctggtggatctccatcTGTTTGGGGAAACTGAAGGCTTTCCCACAGAACGAACATGGGAAGCGCTTCTCTTTGCCACTGGATCTGCTGATAgcgatactactactactgtcaatTGTCAATGGACTTGTGTAGCCATTAAGTGTTGAGGCATTGGCATTGTCTGAGGTCTGGTTTAACAGAAGAGTGTGAGGAGGACGAAGGCCAGAGAGTGTCTGTGTTGTCGCAGGGTCAATGTTCAAGTTGATAGATCCTTTAGAAGGCAGGCTGAAGGCAGAACCTGTTAGGGCATTAACCTGAGGCGCCATCAGTCTCTCTGAATcacaactataggagcaggaCGGAGAATTGCTAGCCGAGTCTGTGTCTGTTCTCGTACGGATACCTCCCCATCCCAGTGGACTAAATCTACACCTTGCCCTGGTTTCAACTAGTATGTTGTCATGGAGATTAAGTTTagattttgttttgtgttcaacTGTCAGTTTCTGGTTATGTTGAACAATGCTCCCTAGCCCAGAGGTAAGGACGCTGTTCCATCCACTGGCCGCCACTATGTCGCCTCTGGTCCAGGCCGGCTTGTTGATGTTATCCCTGGAGCCCTTGGCTGTACTCGTCTGGGTTTGGGAATCCAAGATGGCCATCCAGTCTCCACTGTTAGCCTCCATCCAACCATCTACAGGAAGAGGTTACAAAATAGACTTTACAGACATGGAAGAGAACTCGGGTCCCAAATTATTGGCACCGCTGATaaagataaagcaaaaacaggaacagcaaaatagccccataacatcaaagctCTACTACCATATTTTACCGTAGGTATGAGGTACTTTTTTTTGCATATGCTTCCATGTTTCATTTTTTCGacgccaaagagctctattttcaagTCATCTGGCCAAAGCACCACCTGGAGTTTGataaacggcattggcacttgaATTGAAACCGGTACTATGAGGAGGAACGAGCGTGGTGTTGGAGTGACGTCAGCTGACGTAAGACAATGGGCTATATGTATTTCTCCcttaccttgctcccccatctttaTTCCACTCAGCAGGTCAATGCTCTCTGGTTCGTCTTCTATTGTCTCCTCTTTGACCagcagcagatcaggcttcccatcctccatg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1826083 lncRNA upstream 7166 16427056 ~ 16427430 (+) True G1594733
TU1826082 lncRNA upstream 7993 16426390 ~ 16426603 (+) True G1594732
TU1826081 lncRNA upstream 12811 16421471 ~ 16421785 (+) True G1594731
TU1826077 lncRNA upstream 16708 16417326 ~ 16417888 (+) True G1594727
TU1826026 lncRNA upstream 92840 16324620 ~ 16341756 (+) True G1594677
TU1826099 lncRNA downstream 2076 16438443 ~ 16438828 (+) True G1594739
TU1826102 lncRNA downstream 7401 16443768 ~ 16444079 (+) True G1594742
TU1826104 lncRNA downstream 9875 16446242 ~ 16446500 (+) True G1594744
TU1826105 lncRNA downstream 10252 16446619 ~ 16446840 (+) True G1594745
TU1826109 lncRNA downstream 13370 16449737 ~ 16449998 (+) True G1594749
XM_021575153.2 mRNA upstream 28038 16401950 ~ 16406558 (+) True LOC110498500
XM_021575152.2 mRNA upstream 29878 16401695 ~ 16404718 (+) False LOC110498500
XM_036953792.1 mRNA upstream 33877 16396267 ~ 16400719 (+) False LOC118941341
XM_036953793.1 mRNA upstream 33877 16396272 ~ 16400719 (+) False LOC118941341
XM_036953794.1 mRNA upstream 33877 16396278 ~ 16400719 (+) False LOC118941341
XR_005037589.1 mRNA downstream 378855 16815222 ~ 16818117 (+) False LOC118941345
XR_005037588.1 mRNA downstream 379051 16815418 ~ 16818118 (+) False LOC118941345
XR_005037592.1 mRNA downstream 577869 17014236 ~ 17037820 (+) True LOC118941347
XM_036954341.1 mRNA downstream 606804 17043171 ~ 17083684 (+) False LOC110498663
XM_036954342.1 mRNA downstream 606804 17043171 ~ 17083684 (+) False LOC110498663
TU1825596 other upstream 150393 16279290 ~ 16284203 (+) True G1594292
TU1825653 other upstream 200551 16227199 ~ 16234045 (+) True LOC110498487
TU1825636 other upstream 213190 16219979 ~ 16221406 (+) False LOC110498487
TU1825579 other upstream 323809 16109656 ~ 16110787 (+) True LOC110498508
TU1825626 other upstream 331324 16095775 ~ 16103272 (+) False LOC110498508
TU1826285 other downstream 239242 16675609 ~ 16678122 (+) False G1594895
TU1826287 other downstream 239242 16675609 ~ 16678122 (+) False G1594895
TU1826288 other downstream 239242 16675609 ~ 16678122 (+) True G1594895
TU1826358 other downstream 329176 16765543 ~ 16773709 (+) True G1594955
TU1828713 other downstream 1185051 17621418 ~ 17623473 (+) True pold4

Expression Profile


TU1826096 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU1826096 Expression in each Bioproject

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TU1826096 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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