RNA id: TU1829618


Basic Information

Item Value
RNA id TU1829618
length 238
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1597833
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 18307520 ~ 18307757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttattaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatatacttttttggtaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtaaagcatgggggtggaagcatcatgctttggggctgtttttctgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829422 lncRNA downstream 152799 18154491 ~ 18154721 (-) True G1597650
TU1829419 lncRNA downstream 154281 18152773 ~ 18153239 (-) True G1597647
TU1829411 lncRNA downstream 162556 18144647 ~ 18144964 (-) True G1597639
TU1829404 lncRNA downstream 169603 18137699 ~ 18137917 (-) True G1597632
TU1829401 lncRNA downstream 171632 18135654 ~ 18135888 (-) True G1597629
TU1829627 lncRNA upstream 7241 18314998 ~ 18315213 (-) True G1597842
TU1829882 lncRNA upstream 94460 18402217 ~ 18408359 (-) True G1598084
TU1829912 lncRNA upstream 148202 18455959 ~ 18456664 (-) True G1598114
TU1829913 lncRNA upstream 150626 18458383 ~ 18458602 (-) True G1598115
TU1829927 lncRNA upstream 184634 18492391 ~ 18493564 (-) False G1598128
XR_005037600.1 mRNA downstream 157801 18146158 ~ 18149719 (-) True LOC118941355
XM_036954377.1 mRNA downstream 212991 18007657 ~ 18094529 (-) False LOC110497456
XM_036954378.1 mRNA downstream 212991 18007657 ~ 18094529 (-) True LOC110497456
XM_036954379.1 mRNA downstream 212993 18007657 ~ 18094527 (-) False LOC110497456
XM_021573562.2 mRNA downstream 301770 17980056 ~ 18005750 (-) True LOC110497455
XM_036954380.1 mRNA upstream 167639 18475396 ~ 18577887 (-) False LOC110497459
XM_036954382.1 mRNA upstream 167639 18475396 ~ 18577887 (-) False LOC110497459
XM_036954384.1 mRNA upstream 167639 18475396 ~ 18577887 (-) False LOC110497459
XM_036954385.1 mRNA upstream 167639 18475396 ~ 18577887 (-) False LOC110497459
XM_036954386.1 mRNA upstream 167639 18475396 ~ 18577887 (-) False LOC110497459
TU1828776 other downstream 684044 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 808077 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 808077 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 808077 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 869642 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 455958 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 901535 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1064552 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1247840 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1328261 19636018 ~ 19637027 (-) False G1599760

Expression Profile