RNA id: TU1830958


Basic Information

Item Value
RNA id TU1830958
length 514
RNA type TUCP
GC content 0.54
exon number 2
gene id G1599097
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19209292 ~ 19209964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCATGCCATTTGTATTGTTAAAAAGGAGGTTgagcgagagaaaaagaaagaaaagagaacaaaaagaagaaaaaaaaagaggtaGAGGCGTGCTGACCTATGATACTTGGGGTCGGCCGGTACAGTAATGAACCCCGCCGGGTCCTCCATAGCGTCAAAGAACTCGTTCTCATCATCCTCGTCGCTCGCGTCACCCTTTACTGAGCCCGAacTCTTGCTGTCCAAGGCGGGGTTGCTCTGGGAGAGGGGCAGTACGGTGGCCCCTCTAAAGGCCCTCTCCAGGTGGTTGTGCTGCTTGGCTAGCTGCTCCAATGTTTCCTCCAGCCTTATCCTCTGGTCCCGCTCCGAATGCAAGGCTTTCTGCCACCGCTTACTGTGGGCCTGGGCCAGGGACAGGAAGTCTCTGCACGCCTGGGGGGGAGAAACATTAGGGAAAGGTTAGAGGAACATTTTATAAAAACACCAAAAACAGTACGGTGGGTCTGGGCCAGGGAGTCTCTGCacgcccggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1830933 lncRNA downstream 20273 19188781 ~ 19189019 (-) True G1599076
TU1830921 lncRNA downstream 66543 19142523 ~ 19142749 (-) True G1599064
TU1830552 lncRNA downstream 197894 18973765 ~ 19011398 (-) True G1598733
TU1830549 lncRNA downstream 249706 18958253 ~ 18959586 (-) True G1598730
TU1830541 lncRNA downstream 259953 18946266 ~ 18949339 (-) True G1598722
TU1831011 lncRNA upstream 69598 19279562 ~ 19279871 (-) True G1599131
TU1831021 lncRNA upstream 82068 19292032 ~ 19292237 (-) True G1599137
TU1831030 lncRNA upstream 104874 19314838 ~ 19316046 (-) True G1599146
TU1831031 lncRNA upstream 106274 19316238 ~ 19316632 (-) True G1599147
TU1831014 lncRNA upstream 116362 19326326 ~ 19328350 (-) False G1599133
XM_036954388.1 mRNA downstream 25108 19148402 ~ 19184184 (-) False LOC110497460
XM_036954390.1 mRNA downstream 25108 19148402 ~ 19184184 (-) False LOC110497460
XM_036954391.1 mRNA downstream 25108 19148402 ~ 19184184 (-) False LOC110497460
XM_036954393.1 mRNA downstream 25108 19148402 ~ 19184184 (-) False LOC110497460
XM_036954394.1 mRNA downstream 25108 19148402 ~ 19184184 (-) False LOC110497460
XM_021573585.2 mRNA upstream 9170 19219134 ~ 19221270 (-) False LOC110497466
XM_036954404.1 mRNA upstream 9170 19219134 ~ 19228766 (-) True LOC110497466
XM_036955483.1 mRNA upstream 43408 19253372 ~ 19270658 (-) True LOC110497469
XM_036954405.1 mRNA upstream 93567 19303531 ~ 19310361 (-) False LOC110497471
XM_036954408.1 mRNA upstream 93567 19303531 ~ 19310361 (-) False LOC110497471
TU1830226 other downstream 444870 18763715 ~ 18764422 (-) True G1598418
TU1828776 other downstream 1585816 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 1709849 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 1709849 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 1709849 17494669 ~ 17499443 (-) False G1596970
TU1831082 other upstream 162345 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 345633 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 426054 19636018 ~ 19637027 (-) False G1599760
TU1831723 other upstream 426428 19636392 ~ 19637027 (-) True G1599760
TU1831718 other upstream 428796 19638760 ~ 19642003 (-) False G1599758

Expression Profile