RNA id: TU1834848


Basic Information

Item Value
RNA id TU1834848
length 609
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1602656
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22218231 ~ 22218839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctccagagttcctctgtggagatgggagaaccttccagaagggacaaccatctctgcaactctccaccaatcaggcctttatggtagtggccaggcggaagcgactcctcagtaaaaggcacatgacagcccgcttggagtttgccaaaaggcaactagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacatctagaggaaacctggcaccatccttactgtgaagcatggtgttgaCAGAaacatgatgtggggatgtttttcaaaggacctcagactggggctaagtttcaccttccaacaggacaaccctaagcacacagccaagaaaaagcaggagtggcttcgggacaagtgtctgaatgtccttgagttgccccgATCAAActcctctggagagacctgaaaatagctgttcagcgacgcaccccatccaacctgacagagcttgagaggaatgggagaaactccccaaatacaggtgtgccaagcttgtagggtcatatccaacaagactcgaggctgtaatcactgccaaaggtgcttcaacaaagtactgagtaaagggtctgaattagggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1834817 lncRNA downstream 2366 22210552 ~ 22215865 (-) True G1602626
TU1834847 lncRNA downstream 26093 22191926 ~ 22192138 (-) True G1602655
TU1834779 lncRNA downstream 48520 22167627 ~ 22169711 (-) True LOC110497506
TU1834768 lncRNA downstream 93394 22122501 ~ 22124837 (-) False LOC110497506
TU1834770 lncRNA downstream 93455 22122397 ~ 22124776 (-) False LOC110497506
TU1834863 lncRNA upstream 24793 22243632 ~ 22247511 (-) True G1602671
TU1834879 lncRNA upstream 47563 22266402 ~ 22266823 (-) True G1602687
TU1834885 lncRNA upstream 60423 22279262 ~ 22279604 (-) True G1602693
TU1834892 lncRNA upstream 70542 22289381 ~ 22293391 (-) True G1602700
TU1834916 lncRNA upstream 103524 22322363 ~ 22324915 (-) True G1602714
LOC110498675 mRNA downstream 31444 22155880 ~ 22186787 (-) True LOC110498675
XM_021573642.2 mRNA downstream 62409 22123424 ~ 22155822 (-) False LOC110497506
XM_036954453.1 mRNA downstream 62409 22123424 ~ 22155822 (-) False LOC110497506
XR_005037679.1 mRNA downstream 62409 22123424 ~ 22155822 (-) False LOC110497506
XM_036954452.1 mRNA downstream 62702 22123424 ~ 22155529 (-) False LOC110497506
NM_001124244.1 mRNA upstream 3009 22221848 ~ 22225274 (-) True LOC100135859
XM_021573632.2 mRNA upstream 112238 22331077 ~ 22358393 (-) True LOC110497500
XM_021573628.2 mRNA upstream 268873 22487712 ~ 22497823 (-) True LOC110497496
XM_021573627.2 mRNA upstream 303153 22521992 ~ 22566059 (-) False LOC110497495
XM_036954462.1 mRNA upstream 303153 22521992 ~ 22586452 (-) False LOC110497495
TU1832025 other downstream 2081670 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2109440 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 2576228 19638760 ~ 19642003 (-) False G1599758
TU1831722 other downstream 2581204 19636018 ~ 19637027 (-) False G1599760
TU1834958 other upstream 184677 22403516 ~ 22403837 (-) True G1602753
TU1834968 other upstream 196579 22415418 ~ 22416043 (-) True G1602763
TU1836272 other upstream 922977 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1754951 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1971859 24190698 ~ 24206438 (-) True gpr137c

Expression Profile