RNA id: TU1834892



Basic Information


Item Value
RNA id TU1834892
length 700
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1602700
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22289381 ~ 22293391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTAAGACCTGTTATGAGTTTGAATGGGCCCCTTAATAATGTCTTACAATAGAAACAAACCAACATCCACAGCTCTTACCTTTCCGTTTTTCAGGTGCACCATGAACGGCCTTTCCAGTGCTGCCAGCTTATTCTCTCCGAGAAGGCTTTGCGTTGTGGCGCCCTGGAATATGTTCTTCTTGGCTGAGCGTTGGGCCACACTTTTTATCTTCACGTTTGAGATACCAGTCGGATGAGCTGGTCGTCCTTGCTGTTGGGGTCTCTCCACACTAAGTTGACATCCACGTCACTGGAGATCCTATAGCCAACACTGCCATCCTTTGACCCCTTGGCCCTGTCCACCAGCACCTCGGTGGTGTAGCTGAATTTGTACAACTGGTCATTGTTCAGCCTGGGTCCAGCAGCACCAGCACCTCTAATGGTCATGACGATCAATCGGATGAGAAGAGGACGATAGCCTTATCAACAGCGCATGCACAAGTGCGAATTGACATCGAGGTTTCGTCCTCAAGTAGTAGCCTATCATGATAAAAATCAGTGAGACAATTACATATAGGATAAAACAGTAACGTTAGTTTCACAGCTGTAGCGATACTGCCGAATTCTGCCCAACTTTCAGCAACAAGTTCAAAACAATAAAATACTCTTAACATTTTCAACGTACGACTAAAAGGTTGAAAACAATGGTGACATTTACCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1834885 lncRNA downstream 9777 22279262 ~ 22279604 (-) True G1602693
TU1834879 lncRNA downstream 22558 22266402 ~ 22266823 (-) True G1602687
TU1834863 lncRNA downstream 41870 22243632 ~ 22247511 (-) True G1602671
TU1834848 lncRNA downstream 70542 22218231 ~ 22218839 (-) True G1602656
TU1834817 lncRNA downstream 73516 22210552 ~ 22215865 (-) True G1602626
TU1834916 lncRNA upstream 28972 22322363 ~ 22324915 (-) True G1602714
TU1834923 lncRNA upstream 47308 22340699 ~ 22402816 (-) True G1602718
TU1834937 lncRNA upstream 72432 22365823 ~ 22367574 (-) True G1602732
TU1834959 lncRNA upstream 110491 22403882 ~ 22404083 (-) True G1602754
TU1834962 lncRNA upstream 114673 22408064 ~ 22408293 (-) True G1602757
NM_001124244.1 mRNA downstream 64107 22221848 ~ 22225274 (-) True LOC100135859
LOC110498675 mRNA downstream 102594 22155880 ~ 22186787 (-) True LOC110498675
XM_021573642.2 mRNA downstream 133559 22123424 ~ 22155822 (-) False LOC110497506
XM_021573632.2 mRNA upstream 37686 22331077 ~ 22358393 (-) True LOC110497500
XM_021573628.2 mRNA upstream 194321 22487712 ~ 22497823 (-) True LOC110497496
XM_021573627.2 mRNA upstream 228601 22521992 ~ 22566059 (-) False LOC110497495
XM_036954462.1 mRNA upstream 228601 22521992 ~ 22586452 (-) False LOC110497495
XM_021573626.2 mRNA upstream 228601 22521992 ~ 22587011 (-) True LOC110497495
TU1832025 other downstream 2152820 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2180590 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 2647378 19638760 ~ 19642003 (-) False G1599758
TU1831722 other downstream 2652354 19636018 ~ 19637027 (-) False G1599760
TU1834958 other upstream 110125 22403516 ~ 22403837 (-) True G1602753
TU1834968 other upstream 122027 22415418 ~ 22416043 (-) True G1602763
TU1836272 other upstream 848425 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1680399 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 1897307 24190698 ~ 24206438 (-) True gpr137c

Expression Profile