RNA id: TU1837487


Basic Information

Item Value
RNA id TU1837487
length 542
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1605054
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24261539 ~ 24262080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaaatcggaagtttacatacacttaggttagatcattaaaacacatttttcagccacccacacatttcttgttaacaaactatagttttggcaagtcggttagcatatctactttctgcatgcctttaaacagcttgggaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttcattcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctcttttgcttgacatcatgggaaaatcaaaagaaatcagccaagaccccagaaacaaaattgtagacctccacaagtctggttcatccttgggagcaatttccaaactcctgaaggtaccatgttcatctgtgcaaacaagagtacgcaagtataaacaccatgggaccacacagccatcatacccctcaggaaggagatgcgttctgtctcctagagatgaaagtactttggtgtgaaaattgaaaatcaatcccagaacaacagcaaatgaccttgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837433 lncRNA downstream 5104 24255245 ~ 24256435 (-) True G1605002
TU1837432 lncRNA downstream 88584 24171612 ~ 24172955 (-) True G1605001
TU1837423 lncRNA downstream 100045 24161272 ~ 24161494 (-) True G1604993
TU1837422 lncRNA downstream 100316 24160783 ~ 24161223 (-) True G1604992
TU1837407 lncRNA downstream 123135 24103257 ~ 24138404 (-) True G1604979
TU1837488 lncRNA upstream 202 24262282 ~ 24263132 (-) True G1605055
TU1837494 lncRNA upstream 6444 24268524 ~ 24268758 (-) True G1605061
TU1837552 lncRNA upstream 87402 24349482 ~ 24349771 (-) True G1605116
TU1837554 lncRNA upstream 89800 24351880 ~ 24352171 (-) True G1605118
TU1837556 lncRNA upstream 90721 24352801 ~ 24353218 (-) True G1605120
XM_021573687.2 mRNA downstream 54917 24176332 ~ 24206622 (-) False gpr137c
XM_021573682.2 mRNA downstream 101807 24058372 ~ 24159732 (-) False LOC110497537
XM_036954474.1 mRNA downstream 101807 24058372 ~ 24159732 (-) False LOC110497537
XM_021573684.2 mRNA downstream 101808 24058372 ~ 24159731 (-) False LOC110497537
XM_036955491.1 mRNA downstream 694440 23424239 ~ 23567099 (-) True LOC110498671
XM_021573691.2 mRNA upstream 55253 24317333 ~ 24345566 (-) True LOC110497541
XM_021573694.2 mRNA upstream 112478 24374558 ~ 24385859 (-) False LOC110497542
XM_021573692.2 mRNA upstream 112478 24374558 ~ 24385860 (-) True LOC110497542
XM_036954478.1 mRNA upstream 136490 24398570 ~ 24475536 (-) True LOC110497543
XM_021575224.2 mRNA upstream 277901 24539981 ~ 24541835 (-) True LOC110498563
TU1837435 other downstream 55101 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 287433 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1116995 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 1845496 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 1857702 22403516 ~ 22403837 (-) True G1602753
TU1837685 other upstream 290458 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 548640 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 590389 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 1120680 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1416268 25678348 ~ 25686102 (-) True dio2

Expression Profile