RNA id: TU1837660


Basic Information

Item Value
RNA id TU1837660
length 614
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1605214
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24513735 ~ 24514759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatgaacaaaacggagtgattagtcgacacaaataatattttttgtaaaaactgaacatttgctatctaacagagtctcctcattgaaaacatctgaagttcttcaaaggtaaatgattttatttgaatgcttttctgtttttttgtgtaaatgttgccagctgaatgctaacgctaaatgctacgctaaatgctacgttagccatcaatactgttacacaaatgcttgtttagctatggttcaaaagcatattttgaaaatctgagatgacagtgttgttaacaaaaggctaagcttgagagctagcatatttatttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgagtctgtattcacgatcccagatccgggatggggagatcagaaaggttaaggagaagtttatctatatttccatgtgtaacacatgtattttcatcaacatttataatgagaatttctgtgaattcatatggctctctgcaatatcagtgcatgttttggaactactgaacataacacgccaaagTAAAAtacgatttttggatataaatatgaactttacccaacaaaacatacatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1837561 lncRNA downstream 156522 24357011 ~ 24357213 (-) True G1605125
TU1837557 lncRNA downstream 159874 24353627 ~ 24353861 (-) True G1605121
TU1837556 lncRNA downstream 160517 24352801 ~ 24353218 (-) True G1605120
TU1837554 lncRNA downstream 161564 24351880 ~ 24352171 (-) True G1605118
TU1837552 lncRNA downstream 163964 24349482 ~ 24349771 (-) True G1605116
TU1837837 lncRNA upstream 137225 24651984 ~ 24652290 (-) True G1605380
TU1837847 lncRNA upstream 151115 24665874 ~ 24666210 (-) True G1605390
TU1837856 lncRNA upstream 159887 24674646 ~ 24674855 (-) True G1605399
TU1837867 lncRNA upstream 170512 24685271 ~ 24685561 (-) True G1605410
TU1838039 lncRNA upstream 332453 24847212 ~ 24880338 (-) False sptlc2a
XM_036954478.1 mRNA downstream 38199 24398570 ~ 24475536 (-) True LOC110497543
XM_021573692.2 mRNA downstream 127875 24374558 ~ 24385860 (-) True LOC110497542
XM_021573694.2 mRNA downstream 127876 24374558 ~ 24385859 (-) False LOC110497542
XM_021573691.2 mRNA downstream 168169 24317333 ~ 24345566 (-) True LOC110497541
XM_021573687.2 mRNA downstream 307113 24176332 ~ 24206622 (-) False gpr137c
XM_021575224.2 mRNA upstream 25222 24539981 ~ 24541835 (-) True LOC110498563
XM_036955493.1 mRNA upstream 37614 24552373 ~ 24554024 (-) False LOC118941548
XM_021575225.2 mRNA upstream 50696 24565455 ~ 24567309 (-) True LOC110498564
XM_021573698.2 mRNA upstream 189697 24704456 ~ 24727478 (-) False LOC110497545
XM_036954479.1 mRNA upstream 189697 24704456 ~ 24727478 (-) False LOC110497545
TU1837435 other downstream 307297 24190698 ~ 24206438 (-) True gpr137c
TU1837328 other downstream 539629 23973790 ~ 23974106 (-) True G1604902
TU1836272 other downstream 1369191 23141816 ~ 23144544 (-) True LOC110497482
TU1834968 other downstream 2097692 22415418 ~ 22416043 (-) True G1602763
TU1834958 other downstream 2109898 22403516 ~ 22403837 (-) True G1602753
TU1837685 other upstream 37779 24552538 ~ 24553970 (-) True LOC118941548
TU1838053 other upstream 295961 24810720 ~ 24844137 (-) True LOC110497546
TU1838042 other upstream 337710 24852469 ~ 24856721 (-) True sptlc2a
TU1838926 other upstream 868001 25382760 ~ 25395212 (-) False G1606398
TU1839109 other upstream 1163589 25678348 ~ 25686102 (-) True dio2

Expression Profile