RNA id: TU1841803


Basic Information

Item Value
RNA id TU1841803
length 568
RNA type TUCP
GC content 0.45
exon number 2
gene id G1608992
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27206230 ~ 27207354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAGAAAATACCGTAGCTGTTCAAATGAAACTATATGCACAACAAGCTTGCGTTCAAACCTCAAAACTGTTATGCGGATCTAGTGTGACTTAACGTAGATACTGTAGTTATTTTTAACATGACAGCCATTGAAACATATTCTTGTTTGCAAAGCCTGATTTGTCCCCCCATGCAGATAACATGCTCCGGACACTGTTGTGCCATCTGAGGATACAGCAGCCTTTGAGGAGTAGGACATGTTCCTATGGCTTCACCCCTGTCAATCTGTCGGACCCTGTCCGGCTGCATGTGACTCCACCTAGAACTCTATTCTATCTATATGTTCATCATAGGACAtgtcattcaaacacacacactcccaacaGCATCAGAGGACTATCAGAGGAGACAGGAAGTGAGATGTTTCGTAATGTGTCACTGTGTTTCAGCACCGGTGTTGTGTCGCTATCAGCTATCATTGGTCATTCCACCTCCACCAGACAGTTGGGTGTCAATATACAGAGGAGGCTCTATTCAACGGCCCCTATTAAACGAGTGACCATGACTGGAAGTGGGAAGAAACTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841706 lncRNA downstream 140753 27063727 ~ 27065477 (-) True G1608904
TU1841663 lncRNA downstream 168455 27035302 ~ 27037775 (-) True G1608863
TU1841483 lncRNA downstream 242931 26698692 ~ 26963299 (-) True G1608712
TU1841833 lncRNA upstream 24937 27232291 ~ 27291107 (-) True G1609001
TU1841896 lncRNA upstream 177123 27384477 ~ 27387965 (-) True G1609062
TU1841920 lncRNA upstream 210588 27417942 ~ 27418188 (-) True G1609081
TU1841921 lncRNA upstream 211053 27418407 ~ 27418633 (-) True G1609082
TU1841950 lncRNA upstream 264405 27471759 ~ 27472034 (-) True G1609103
XM_021573782.2 mRNA downstream 33046 27168907 ~ 27173184 (-) True LOC110497591
XM_021573781.2 mRNA downstream 45215 27155132 ~ 27161015 (-) True LOC110497590
trnal-uaa-59 mRNA downstream 52530 27153618 ~ 27153700 (-) True trnal-uaa-59
LOC110498695 mRNA downstream 66773 27131709 ~ 27139457 (-) True LOC110498695
XR_002469689.2 mRNA downstream 293762 26892669 ~ 26912468 (-) False shprh
XM_036954556.1 mRNA upstream 5930 27213284 ~ 27237015 (-) False syne1b
XM_036954557.1 mRNA upstream 5930 27213284 ~ 27237034 (-) False syne1b
XM_036954558.1 mRNA upstream 5930 27213284 ~ 27350888 (-) False syne1b
XM_036954560.1 mRNA upstream 5930 27213284 ~ 27350888 (-) False syne1b
XM_036954548.1 mRNA upstream 5930 27213284 ~ 27350889 (-) False syne1b
TU1841799 other downstream 4495 27195748 ~ 27201735 (-) True G1608988
TU1841644 other downstream 264850 26937870 ~ 26941380 (-) True G1608844
TU1841604 other downstream 293793 26911397 ~ 26912437 (-) True shprh
TU1841342 other downstream 595247 26584938 ~ 26610983 (-) True G1608576
TU1841293 other downstream 778927 26424031 ~ 26427303 (-) True G1608529
TU1842195 other upstream 671107 27878461 ~ 27878816 (-) True nkx2.9
TU1842362 other upstream 1029242 28236596 ~ 28269145 (-) True plekhh1
TU1842983 other upstream 1434934 28642288 ~ 28650064 (-) True crip1
TU1843094 other upstream 1516901 28724255 ~ 28731546 (-) True mideasb
TU1843130 other upstream 1582067 28789421 ~ 28790413 (-) True G1610194

Expression Profile