RNA id: TU1841954


Basic Information

Item Value
RNA id TU1841954
length 409
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1609107
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27478656 ~ 27479064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacaaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtctctgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1841953 lncRNA downstream 3694 27474543 ~ 27474962 (-) True G1609106
TU1841952 lncRNA downstream 4251 27474009 ~ 27474405 (-) True G1609105
TU1841950 lncRNA downstream 6622 27471759 ~ 27472034 (-) True G1609103
TU1841921 lncRNA downstream 60023 27418407 ~ 27418633 (-) True G1609082
TU1841920 lncRNA downstream 60468 27417942 ~ 27418188 (-) True G1609081
TU1841955 lncRNA upstream 3536 27482600 ~ 27482868 (-) True G1609108
TU1841959 lncRNA upstream 12406 27491470 ~ 27491683 (-) True G1609112
TU1841974 lncRNA upstream 26628 27505692 ~ 27506092 (-) True G1609127
TU1841978 lncRNA upstream 30878 27509942 ~ 27510237 (-) True G1609131
TU1841985 lncRNA upstream 44966 27524030 ~ 27524235 (-) True G1609138
XM_021573806.2 mRNA downstream 30392 27440900 ~ 27448264 (-) True LOC110497600
XM_036954565.1 mRNA downstream 38581 27425763 ~ 27440075 (-) False LOC110497599
XM_036954566.1 mRNA downstream 38581 27425763 ~ 27440075 (-) False LOC110497599
XM_036954569.1 mRNA downstream 38581 27425763 ~ 27440075 (-) True LOC110497599
XM_036954570.1 mRNA downstream 38757 27425763 ~ 27439899 (-) False LOC110497599
trnaa-agc-7 mRNA upstream 33087 27512151 ~ 27512223 (-) True trnaa-agc-7
XM_021573807.2 mRNA upstream 33797 27512861 ~ 27522127 (-) False LOC110497601
XM_021573808.2 mRNA upstream 33797 27512861 ~ 27522127 (-) True LOC110497601
XM_021573812.2 mRNA upstream 45581 27524645 ~ 27540638 (-) False LOC110497602
XM_021573810.2 mRNA upstream 45581 27524645 ~ 27541304 (-) True LOC110497602
TU1841803 other downstream 271302 27206230 ~ 27207354 (-) True G1608992
TU1841799 other downstream 276921 27195748 ~ 27201735 (-) True G1608988
TU1841644 other downstream 537276 26937870 ~ 26941380 (-) True G1608844
TU1841604 other downstream 566219 26911397 ~ 26912437 (-) True shprh
TU1841342 other downstream 867673 26584938 ~ 26610983 (-) True G1608576
TU1842195 other upstream 399397 27878461 ~ 27878816 (-) True nkx2.9
TU1842362 other upstream 757532 28236596 ~ 28269145 (-) True plekhh1
TU1842983 other upstream 1163224 28642288 ~ 28650064 (-) True crip1
TU1843094 other upstream 1245191 28724255 ~ 28731546 (-) True mideasb
TU1843130 other upstream 1310357 28789421 ~ 28790413 (-) True G1610194

Expression Profile