RNA id: TCONS_00049596


Basic Information

Item Value
RNA id TCONS_00049596
length 448
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_025064
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8825382 ~ 8836722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCATTAAAGTtatgtattaaaaataagctACAATATTGGAAGTTTTTGCTTGCAAGCAACTCATCTCGAAGCTAGACGGATAACTTAAGCAAAAGGCTCCAGTGTTTTAAGTAAGCATGGACAAACCAGTGTGCCTGATCAACACAGACTCAGATGGGAAGCTGTATGTGCAGCCGGCGGCACTGCAGGTCTTGCAGCAGATCCAGCAGCCGGTGGTGGTGGTGGCCGTGGTGGGTCTCTACCGCACCGGGAAGTCCTACCTAATGAACCACCTGGCTGGGAAACAAACAGGATTTGCTCTGGGCGGCACTATTGAATCCAAGACAAAGGGCATCTGGATGTGGTGTGTGCCCCATCCCACTAAAACAGGAACCACTCTCGTGCTGCTGGACACTGAGGGACTCGGAGATGTGGAAAAGGGTGACTCGAAGCATGACACCAACATC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-83 Predicted to enable GTP binding activity and GTPase activity. Orthologous to several human genes including GBP1 (guanylate binding protein 1); GBP2 (guanylate binding protein 2); and GBP3 (guanylate binding protein 3).

Ensembl:

ensembl_id ENSDART00000167474

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052322 lncRNA upstream 12528 8814055 ~ 8814377 (+) True XLOC_025063
TCONS_00052321 lncRNA upstream 20156 8806318 ~ 8806749 (+) True XLOC_025062
TCONS_00049590 lncRNA upstream 724214 8094011 ~ 8102691 (+) True XLOC_025058
TCONS_00049587 lncRNA upstream 1032045 7782563 ~ 7794860 (+) False XLOC_025056
TCONS_00052320 lncRNA upstream 1073731 7714364 ~ 7753174 (+) True XLOC_025055
TCONS_00052593 lncRNA downstream 16485 8847767 ~ 8849729 (+) True XLOC_025065
TCONS_00052323 lncRNA downstream 43674 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052324 lncRNA downstream 146950 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052325 lncRNA downstream 147454 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052594 lncRNA downstream 200923 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00049592 mRNA upstream 529655 8290595 ~ 8297250 (+) False XLOC_025060
TCONS_00049593 mRNA upstream 530092 8295335 ~ 8296813 (+) True XLOC_025060
TCONS_00049591 mRNA upstream 599696 8224622 ~ 8227209 (+) True XLOC_025059
TCONS_00049589 mRNA upstream 992399 7822948 ~ 7834506 (+) True XLOC_025057
TCONS_00049588 mRNA upstream 1007065 7808459 ~ 7819840 (+) True XLOC_025056
TCONS_00049610 mRNA downstream 240524 9071806 ~ 9091825 (+) False XLOC_025082
TCONS_00049611 mRNA downstream 246625 9077907 ~ 9088394 (+) False XLOC_025082
TCONS_00049613 mRNA downstream 250973 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049612 mRNA downstream 250973 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049614 mRNA downstream 251088 9082370 ~ 9083907 (+) True XLOC_025082
TCONS_00049594 other upstream 437234 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049575 other upstream 2456103 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049569 other upstream 2788567 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049552 other upstream 4556359 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049516 other upstream 7023560 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049598 other downstream 197212 9028494 ~ 9028642 (+) True XLOC_025069
TCONS_00049599 other downstream 200088 9031370 ~ 9031520 (+) True XLOC_025070
TCONS_00049600 other downstream 204394 9035676 ~ 9035776 (+) True XLOC_025072
TCONS_00049601 other downstream 204908 9036190 ~ 9036296 (+) True XLOC_025073
TCONS_00049602 other downstream 205435 9036717 ~ 9036823 (+) True XLOC_025074