RNA id: TCONS_00052593


Basic Information

Item Value
RNA id TCONS_00052593
length 1963
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_025065
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8847767 ~ 8849729 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aacagaaaacgtCAGCCATCACGTGGATTTTCATCCTTTTGTTTACTGTGACTTACTCGGTAAGCGCACCTTTATTTTGCTAATTTTACACAAAATACACATTTGTGATTGCACATAGGCTAACTGGATGCTGATATTGTAACTTTTTTACATCTATTTTAGTGCTAAATCTGTCAATGTGCAAACTGAATCTGCATTGAGTGGAACTGGATATCTGACACAGATATTTCCTGATTACACGGTAAGTCAGAATatgataattaaaaattatatatgctATAAGCTTATCTACAAAGTCAGTTTTTAAACATATGTAGCAACAAAGTAGTATTGATTTATGTAGCATGATGAAAAGATTGTCATCTCATTGCTAATTTTAGCTTTAGCTTTTAATAGCTACCTAATATGGCTTCAATGTAGGCTTTGATAAAACATGTATTTCCCTAATGCTGTGTTTGCAAATTTTACTGTAGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAACTGTTTTATATGTCCATTTCAGTGCTGAACCTGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTACTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattatttgctatgTGGTATTATTGTCCTAATaactgaaaatacaattaaaaaatgttaCGCATACATTATGGTTGTTAATTTAGTCTCTTTCCTTATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGAACTGTATTTTATTACTTAAGCAACTAAGGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAATTcttttgaacaaaacaaaatacacaaatacataaattaaatgttcTGCCATATTTTACCCAAGCTTTCTTTCACCTTTGGTGAATTTTACTAAATTTACTAAAATACTCCATTTTAGTTGTTTAACACGCTTTGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTTACAATAcacagtatatactgtacatgttgaTTTCAGTGGCTGTCCAGGTGAGTCCACAATCAACATTTTCAAATGTATGTATTGTGTTAAAAGAACAGGGCTTTGAGACTAAGTAAAATTACTTCAGCTTCCCTCACATATATTTTCAACTAGgctataaaaaataacatttcatgCGACTgctgacattgtttttttcttttaattgttttaggaGAAAAAACAGGAAGCTACATTCATAAATGGATGATCATTTTTGAGGGGCAAATAATCTGTGAGAGCATCCAGCCAATTTTTCTGTCTGGTATAGCGGCTGTGTTTTCAACTTACGACATTTTCAATGTGGAGAACCAAGCTGAGGCTGCATGCACATTGGAATTAATTCAGAGGTTAGACGCTTagattcatatatttatttctctTCACATTATTATCATATAAACTTTAACCCACACTAATTCTGAATGTATGCCTTTTTTCCAGAAGCTTCATGGGTAAACCCTGAAAAAGGCTCCAAGAGTGGACACATCCTATCGAAGGGAATGGGGAAGGTCACCCACAAAAATAATTGTCAACACTAAGGTTGCCAGTTTACTTAAAGAAGCTAATGGACTTTGAGTGGGATGTCATACAAgtgacaccacacacacacacacacacacacacacacacacacaccttacacATCCTCTTCACTAATGGCACTCATTTTATTGTGTTAGTCGCATACTTTTTTCAGGTGTTTGTTCTTGAATACCTAAACTGTTCATtgcattcttttttatttcttactAACTAATTCTGTAATTCACTTAGAAGTTTTCAGAGTAGTAATTGTTGTAGTAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052322 lncRNA upstream 33390 8814055 ~ 8814377 (+) True XLOC_025063
TCONS_00052321 lncRNA upstream 41018 8806318 ~ 8806749 (+) True XLOC_025062
TCONS_00049590 lncRNA upstream 745076 8094011 ~ 8102691 (+) True XLOC_025058
TCONS_00049587 lncRNA upstream 1052907 7782563 ~ 7794860 (+) False XLOC_025056
TCONS_00052320 lncRNA upstream 1094593 7714364 ~ 7753174 (+) True XLOC_025055
TCONS_00052323 lncRNA downstream 25227 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052324 lncRNA downstream 128503 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052325 lncRNA downstream 129007 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052594 lncRNA downstream 182476 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052595 lncRNA downstream 874067 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00049597 mRNA upstream 11045 8827013 ~ 8836722 (+) True XLOC_025064
TCONS_00049595 mRNA upstream 11423 8825382 ~ 8836344 (+) False XLOC_025064
TCONS_00049596 mRNA upstream 16485 8826905 ~ 8831282 (+) False XLOC_025064
TCONS_00049592 mRNA upstream 550517 8290595 ~ 8297250 (+) False XLOC_025060
TCONS_00049593 mRNA upstream 550954 8295335 ~ 8296813 (+) True XLOC_025060
TCONS_00049610 mRNA downstream 222077 9071806 ~ 9091825 (+) False XLOC_025082
TCONS_00049611 mRNA downstream 228178 9077907 ~ 9088394 (+) False XLOC_025082
TCONS_00049613 mRNA downstream 232526 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049612 mRNA downstream 232526 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049614 mRNA downstream 232641 9082370 ~ 9083907 (+) True XLOC_025082
TCONS_00049594 other upstream 458096 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049575 other upstream 2476965 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049569 other upstream 2809429 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049552 other upstream 4577221 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049516 other upstream 7044422 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049598 other downstream 178765 9028494 ~ 9028642 (+) True XLOC_025069
TCONS_00049599 other downstream 181641 9031370 ~ 9031520 (+) True XLOC_025070
TCONS_00049600 other downstream 185947 9035676 ~ 9035776 (+) True XLOC_025072
TCONS_00049601 other downstream 186461 9036190 ~ 9036296 (+) True XLOC_025073
TCONS_00049602 other downstream 186988 9036717 ~ 9036823 (+) True XLOC_025074

Expression Profile

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