RNA id: TCONS_00052324


Basic Information

Item Value
RNA id TCONS_00052324
length 320
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id XLOC_025067
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 8978232 ~ 8978689 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTGCTACCAGGTGGACACAGTTAcctgcagggagagagagagaggaaaaacacaatGCTCATTGTCCACCAAAAGATATGTCTCAGGACGCAAGCCCTGGGATAACCGTTATCACCCTCCTGGAGCATATACAGgtgaattGCTGGGAATGGAGCACCTTTACAGCCAGACCGGCAAAACCCTGACTCCGGTGCTCCAGAACCCAGAGGAGGAAGACAGGCTGGTGGAGGAAGTACATGACGAGGATCTACAAGATGACGGGTTTGAGTAGGAGATCATGGAGGACATCACAGTTCAAGTGCTGTATGAGGATGAC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0016462 pyrophosphatase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052323 lncRNA upstream 102402 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052593 lncRNA upstream 128503 8847767 ~ 8849729 (+) True XLOC_025065
TCONS_00052322 lncRNA upstream 163855 8814055 ~ 8814377 (+) True XLOC_025063
TCONS_00052321 lncRNA upstream 171483 8806318 ~ 8806749 (+) True XLOC_025062
TCONS_00049590 lncRNA upstream 875541 8094011 ~ 8102691 (+) True XLOC_025058
TCONS_00052325 lncRNA downstream 47 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052594 lncRNA downstream 53516 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052595 lncRNA downstream 745107 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052596 lncRNA downstream 1201202 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052597 lncRNA downstream 1767711 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00049597 mRNA upstream 141510 8827013 ~ 8836722 (+) True XLOC_025064
TCONS_00049595 mRNA upstream 141888 8825382 ~ 8836344 (+) False XLOC_025064
TCONS_00049596 mRNA upstream 146950 8826905 ~ 8831282 (+) False XLOC_025064
TCONS_00049592 mRNA upstream 680982 8290595 ~ 8297250 (+) False XLOC_025060
TCONS_00049610 mRNA downstream 93117 9071806 ~ 9091825 (+) False XLOC_025082
TCONS_00049611 mRNA downstream 99218 9077907 ~ 9088394 (+) False XLOC_025082
TCONS_00049613 mRNA downstream 103566 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049612 mRNA downstream 103566 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049614 mRNA downstream 103681 9082370 ~ 9083907 (+) True XLOC_025082
TCONS_00049594 other upstream 588561 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049575 other upstream 2607430 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049569 other upstream 2939894 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049552 other upstream 4707686 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049516 other upstream 7174887 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049598 other downstream 49805 9028494 ~ 9028642 (+) True XLOC_025069
TCONS_00049599 other downstream 52681 9031370 ~ 9031520 (+) True XLOC_025070
TCONS_00049600 other downstream 56987 9035676 ~ 9035776 (+) True XLOC_025072
TCONS_00049601 other downstream 57501 9036190 ~ 9036296 (+) True XLOC_025073
TCONS_00049602 other downstream 58028 9036717 ~ 9036823 (+) True XLOC_025074

Expression Profile

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