RNA id: TU1843127


Basic Information

Item Value
RNA id TU1843127
length 2869
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1610193
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 28790722 ~ 28793590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGCCAGCATCCTTTTTCAGGAGTATTACCGAATCAGTCAGTGCAGTAGTCCTAGGATTATGAGCGTTTGGAGAGCTAGAAAAGCAGATCAATGCTGTGGACCAGGTGGGACGATAAGAGTGAAGAGTGATCGAGATTGTGAGGAGAAATAGAAAACGAAACAAATTAAATATTCCAACCAAAATACATACGGTACTATCCAACAAGAAGAAGAATTCCCTTTCAGACATTCACAATGCATTATGGGAACTGGTATGCTGCTTACTTTACTGATTGGTTGATTGTTTGGTTTTTCTCTTTTCTTGGTAGGCAGCGCATGCAAGGAGTAATAGTGCTGGAAGCAGTGGTTAGTTATATTACAGTATCTTACAAGCAGAGGTGGTGGGGAGAGGTAGCCCGTGTTTCAGTCGGTTTctgctatcattccactccttgctaCTCCTTTTCATTCCAATGTGGGGCAATAACACggagtacaaggagtggaatgtcaGAACAAAACCGGTTCTGGATTTCAggctagaggggggggggggggtagaagaaAGGTCAGGTGAGGGAGGTTTTAAATGATAGTGTTCATTGAAATTGTGGTTGGTTCTCAAACAATACATGAACTCTGAGGTAATAGTgcacacaacatacagtatgtcattacaAAAGAAACAAAACATTCTCTtgcacatgtttttttttttatcctttgGGAAGTTTGAAACACTGATTTGGTATACGATACATGATATTTATATGGTATAAATAGCATGACATTATTTGACATAAATATTGGACCTGTCATAACATTTAGACAAACAGGATATCGAAGTTTTAGTTTAAAACATTCCCTTTCTTTAATATCTTAAATAAAAATGTTCtttcttaaaataatgtctgaataaataaaataaaaccattCACTTTGCTTCCTTTTCCTTGTGGTGAATAATATAAAGTTACACTCACATGAAGAGGACTGTCTTTGAAGCTGGCACAATTTTTTGCAGGGGGTCATTTTGTAAAAATGAGAATCATAGCCTACTTTGTAGTGAAACCAGGAGCTGCCCAAAGTGCCAAGGCAAGGCACACATTAAGACAAGTGTTTATTATACAGTAATAATCATTATAACTTAGTGTTGCCTTGTATTCACTACTACTGTTATAAAGTTATCAGCAGGCTGTGTCCAAATTCTCCCCAAGTGTGCAGTTCCCTCCCATCCATGCATTTAAAATCGCTGGATTGGTGTAAGCATGGGCAAGGCTAGGGAGGGTTGCCATCATATTTCTTACACCATTACTTTTACGTCCAAGGCAGAAGGGTAAAGAATTAGGACGCAAAGTCAGACTCCTTTCTCAAGAGGAGCATATAAAGGGAATCAAGGCCCAGTTACTAGTATTCAATCGCACACTTACTTTGACATTTAGGTTCccccaatcaatcaatcaatcaacacaGTAGGCACAAGTAGGTGtgtgagctcacacacacactatacgattgTATTAAAGGAAGGATCGCTCAAAATGATCACTTCTTTCACTGATCGATCGATTGCTTTAGATGCCTTTGAAATAAAGGACCCTCGCTATACAGTACATCTGAAGtcaaagacggagagagagagagagtgtaactgGTGTGACAGGAGCgtcaaaatataaataaataggaTCTGTAGATAGTGTACATTTCTCTCGAGGGCTTCATGGCCCTACATGTAGGCCTGCTATGCACTGCGCTCCCTAGGCCAGTACAGAGGAAACACAATAGAACAAGCCAATATAATAATggttagtgattaatacacaagTGCTCATCCACTGAATTTCCACCATGAGCGTCCTAGGGTAATCTGAATGAAGTGTGTTCACTTTCACTGAGGAGATGAGGGAAGTAAGTACCCCAACATTTTACACACAGCATGACGCATCTGGATACTTTTTGCATGAAGTATGACCGCTTAAAGTGGGCTTATAAATGAGTGATTAAACGATGACACAATGGAAGGAATAAGAGGAGAAAGAGTGAAGGATTTACAAGTGAAAGAGATAGAGGACAGCGGGGTGTGGGGAGAAACTgaacggggaggagaggggggggggggggggcattaagtTCAGTATTCTCTGACAGAGGCCTCAGATCCTCATCATGATCGTCTGGTCTGTATGAACATCCCACCCTCTGCTGTGGCAACAACACTGACCTCCCAGGGCCTACTCGCAAAGCATCTCAggataggagtgctgatctaggataagTTTagtgatttattattatttacgTACTTCATGAATAAGATTACAATGACAGAGGGGACCTGCTCTTACCCTGAGACGCTTTAATAAATAGGCCCAGAGCTTCCTGTGGGCCAGGCTTGGACCAGAGCTGGAGCAGTGGGCCACTATCTGCTGCTCAGCTTGCTGGagcacttcctctctctttcctcgcgGCTGCAGACTTTCCCCCTGGGGGCGTGCTGGTGGAAGGGGCCGGTGCGGGCCTGGCGACTGCAGCAAGTCTcctggtggtgagggtaggagcgccggggaggagggggggacccGGAGAAGCTAGGAGGGGATCGGGACCGACCGAAAcaaacccctcctcctctctctcccccgcggTGTTCGTggcgggagggggaggaggagacagagcgcTGTAGAGAGGAGGAGCTGCGTGGAGATGCGCTGGAGCtccggtggtgatggtggtggggggAGTTGGTCAGGCTACACATGCCCATCCGGGAGCCTCCGTGCTGAGCTGAGGAGCGGCCGTGGTGGGGGGAGCCGCGGACAGAACCACCACCATGACCATGGTGCATGAGCTGGGCCAGGCAGGTCAGGAGGTCTGAGTCGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1843125 lncRNA downstream 3083 28787356 ~ 28787639 (-) True G1610192
TU1843120 lncRNA downstream 5845 28784301 ~ 28784877 (-) False G1610191
TU1843121 lncRNA downstream 5900 28784301 ~ 28784822 (-) True G1610191
TU1843118 lncRNA downstream 7190 28783307 ~ 28783532 (-) True G1610190
TU1843117 lncRNA downstream 7885 28782620 ~ 28782837 (-) True G1610189
TU1843133 lncRNA upstream 5791 28799381 ~ 28799822 (-) True G1610197
TU1843148 lncRNA upstream 22788 28816378 ~ 28816600 (-) True G1610211
TU1843162 lncRNA upstream 47449 28841039 ~ 28841275 (-) True G1610225
TU1843164 lncRNA upstream 49258 28842848 ~ 28843077 (-) True G1610227
TU1843166 lncRNA upstream 51572 28845162 ~ 28845511 (-) True G1610229
XM_036954608.1 mRNA downstream 24519 28757259 ~ 28766203 (-) True tmem62
XM_036954599.1 mRNA downstream 55232 28704168 ~ 28735490 (-) False mideasb
XM_021575335.2 mRNA downstream 59094 28704168 ~ 28731628 (-) False mideasb
XM_021573871.2 mRNA upstream 141489 28935079 ~ 28953899 (-) False LOC110497632
XM_021573872.2 mRNA upstream 141489 28935079 ~ 28957730 (-) True LOC110497632
XM_036954609.1 mRNA upstream 215225 29008815 ~ 29090489 (-) False LOC110497635
XR_002469847.2 mRNA upstream 415234 29208824 ~ 29212107 (-) True LOC110498568
XM_021574959.2 mRNA upstream 923472 29717062 ~ 29729253 (-) True LOC110498326
TU1843130 other downstream 309 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 59176 28724255 ~ 28731546 (-) True mideasb
TU1842983 other downstream 140658 28642288 ~ 28650064 (-) True crip1
TU1842362 other downstream 521577 28236596 ~ 28269145 (-) True plekhh1
TU1842195 other downstream 911906 27878461 ~ 27878816 (-) True nkx2.9
TU1844398 other upstream 1092755 29886345 ~ 29886690 (-) True G1611350
TU1844446 other upstream 1153810 29947400 ~ 29955786 (-) False G1611392
TU1844494 other upstream 1241328 30034918 ~ 30035682 (-) True G1611431
TU1846340 other upstream 2669531 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 2926332 31719922 ~ 31807247 (-) True G1613722

Expression Profile