RNA id: TU1844494



Basic Information


Item Value
RNA id TU1844494
length 744
RNA type TUCP
GC content 0.56
exon number 2
gene id G1611431
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30034918 ~ 30035682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCAGGTGTGTGTCCCCCTGTGGAACTGGTCTCCTGGGTCTTTGTGTAGTCAGGTAAAAGTGCTGTGGTTGTGATGGGAGCGGTGCCTTTGGGCCACGTCACTGTTGCTGGGCTGCAGCAGTCTGAGGTAGCTTGATTCACGTGGTGTCCATTGCCCTCACGGAGGTCTGTGGTCCCCCCTGGTTTACATTCATCGCTAGGCTGTGGGGGTCGAGGCTGGGTCCAGGGCTGAGGCTGGGTTCGGGGCTGAGGGTGCTGAAGCTGAGACTGGGTCCAGGGCCGTGTTGGGGTTAGATTCTGGTTCTCTGTGCTTGGAGAGAGCTGCACAGGAAGAACTGAGGTAGTGGTTTGTGTTGTCATTGTTATTGATACTTCTTCACTCTCCAGTGGCAAACCAGGGCCAGCCGCGAGGAAATGGGAGTTATCACGTCCGTCATGAAGGTGTGTGTGGTCGTCGTAGTCACTGTCGTCTTTGGCGACGGCAGCAGTGCCGTTAGTGAGGGTATTGGTGCAGGAGGCAGAGTCTGGCTGCTGGGGCTCCTCCTCCTCTGGCCTGTCAGCTTCTGGGTGTTTGCTGACATCACCCCTCTCAGGCTGGGAGGAGACATAACAGTCACTACAGGGCTGCTGAGCAACAGCAGGGTCAGTGGCTGCAGTCTGGTCGTGATGTTTACAGTTCTCatcatcatACTCTTCCTCATCACGCGGACAGATTAAAGACTTGCTGTCGATGGACTTCTTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1844493 lncRNA downstream 743 30033967 ~ 30034175 (-) True G1611430
TU1844490 lncRNA downstream 4116 30029347 ~ 30030802 (-) True G1611427
TU1844489 lncRNA downstream 5814 30028885 ~ 30029104 (-) True G1611426
TU1844488 lncRNA downstream 10638 30024041 ~ 30024280 (-) True G1611425
TU1844486 lncRNA downstream 12066 30022538 ~ 30022852 (-) True G1611423
TU1844498 lncRNA upstream 3278 30038960 ~ 30039753 (-) True G1611435
TU1844499 lncRNA upstream 4663 30040345 ~ 30040625 (-) True G1611436
TU1844502 lncRNA upstream 8211 30043893 ~ 30044139 (-) False G1611438
TU1844501 lncRNA upstream 8756 30044438 ~ 30044671 (-) False G1611438
TU1844504 lncRNA upstream 8756 30044438 ~ 30044929 (-) True G1611438
XM_021574959.2 mRNA downstream 305665 29717062 ~ 29729253 (-) True LOC110498326
XR_002469847.2 mRNA downstream 822811 29208824 ~ 29212107 (-) True LOC110498568
XM_036954609.1 mRNA downstream 944429 29008815 ~ 29090489 (-) False LOC110497635
XM_021573872.2 mRNA downstream 1077188 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 1081019 28935079 ~ 28953899 (-) False LOC110497632
XM_036954637.1 mRNA upstream 911771 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954638.1 mRNA upstream 911771 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954639.1 mRNA upstream 933193 30968875 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954642.1 mRNA upstream 1531671 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 1531671 31567353 ~ 31629055 (-) False bcl11ba
TU1844446 other downstream 79132 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 148228 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 1244505 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 1303372 28724255 ~ 28731546 (-) True mideasb
TU1842983 other downstream 1384854 28642288 ~ 28650064 (-) True crip1
TU1846340 other upstream 1427439 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 1684240 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 1980518 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 2422848 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 2615244 32650926 ~ 32657769 (-) True G1615357

Expression Profile